{ "type": "genome", "identifier": "GCF_000381345.1", "organism": "Deinococcus apachensis DSM 19763", "title": "Deinococcus apachensis DSM 19763", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000381345.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441322", "wgs_master": "ARLS00000000.1", "refseq_category": "reference genome", "taxid": "1121377", "species_taxid": "309886", "organism_name": "Deinococcus apachensis DSM 19763", "infraspecific_name": "strain=DSM 19763", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/24", "asm_name": "ASM38134v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000381345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/381/345/GCF_000381345.1_ASM38134v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4452642", "genome_size_ungapped": "4448688", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "52", "contig_count": "57", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000381345.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "4392", "protein_coding_gene_count": "4248", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-24", "dateModified": "2013-04-24", "datePublished": "2013-04-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Deinococcus apachensis DSM 19763" ], "sample_taxid": [ "1121377" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.223 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4452642", "Number of Sequences": "52", "Longest Sequences (bp)": "886377", "N50 (bp)": "193107", "Gap Ratio (%)": "0.088801", "GCcontent (%)": "68.7", "Number of CDSs": "4396", "Average Protein Length": "294.5", "Coding Ratio (%)": "87.2", "Number of rRNAs": "1", "Number of tRNAs": "59", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Deinococcus apachensis", "strain": "strain=DSM 19763", "accession": "GCA_000381345.1", "taxid": 309886, "species_taxid": 309886, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus terrestris", "strain": "strain=SDU3-2", "accession": "GCA_009377345.1", "taxid": 2651870, "species_taxid": 2651870, "relation_to_type": "type", "validated": true, "ani": 82.0531, "matched_fragments": 723, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus hopiensis", "strain": "strain=KR-140", "accession": "GCA_900176165.1", "taxid": 309885, "species_taxid": 309885, "relation_to_type": "type", "validated": true, "ani": 80.1065, "matched_fragments": 738, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus soli (ex Cha et al. 2016)", "strain": "strain=N5", "accession": "GCA_001007995.1", "taxid": 1309411, "species_taxid": 1309411, "relation_to_type": "type", "validated": true, "ani": 79.3991, "matched_fragments": 564, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus ficus", "strain": "strain=CC-FR2-10", "accession": "GCA_003444775.1", "taxid": 317577, "species_taxid": 317577, "relation_to_type": "type", "validated": true, "ani": 79.1823, "matched_fragments": 535, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus ficus", "strain": "strain=DSM 19119", "accession": "GCA_000430865.1", "taxid": 317577, "species_taxid": 317577, "relation_to_type": "type", "validated": true, "ani": 79.0711, "matched_fragments": 540, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus thermophilus", "strain": "strain=JCM10941", "accession": "GCA_019973715.1", "taxid": 274, "species_taxid": 274, "relation_to_type": "type", "validated": true, "ani": 75.8057, "matched_fragments": 77, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus thermophilus", "strain": "strain=HB8", 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