{
    "type": "genome",
    "identifier": "GCF_000381745.1",
    "organism": "Psychromonas ossibalaenae ATCC BAA-1528",
    "title": "Psychromonas ossibalaenae ATCC BAA-1528",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000381745.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441329",
        "wgs_master": "ARML00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1278307",
        "species_taxid": "444922",
        "organism_name": "Psychromonas ossibalaenae ATCC BAA-1528",
        "infraspecific_name": "strain=JAMM 0738",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/04/24",
        "asm_name": "ASM38174v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000381745.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/381/745/GCF_000381745.1_ASM38174v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5204311",
        "genome_size_ungapped": "5202369",
        "gc_percent": "42.000000",
        "replicon_count": "0",
        "scaffold_count": "107",
        "contig_count": "113",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000381745.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "4555",
        "protein_coding_gene_count": "4415",
        "non_coding_gene_count": "67",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-04-24",
    "dateModified": "2013-04-24",
    "datePublished": "2013-04-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Psychromonas ossibalaenae ATCC BAA-1528"
        ],
        "sample_taxid": [
            "1278307"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.487 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5204311",
        "Number of Sequences": "107",
        "Longest Sequences (bp)": "260592",
        "N50 (bp)": "81570",
        "Gap Ratio (%)": "0.037315",
        "GCcontent (%)": "42.0",
        "Number of CDSs": "4415",
        "Average Protein Length": "328.3",
        "Coding Ratio (%)": "83.6",
        "Number of rRNAs": "1",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Psychromonas ossibalaenae",
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                "species_taxid": 444922,
                "relation_to_type": "type",
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                "total_fragments": 1677,
                "ani_threshold": 95,
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            },
            {
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                "strain": "strain=ATCC BAA-1526",
                "accession": "GCA_000428725.1",
                "taxid": 444919,
                "species_taxid": 444919,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_000482725.1",
                "taxid": 168275,
                "species_taxid": 168275,
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                "matched_fragments": 225,
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            },
            {
                "organism_name": "Psychromonas antarctica",
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                "accession": "GCA_022267535.1",
                "taxid": 67573,
                "species_taxid": 67573,
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                "matched_fragments": 347,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Psychromonas ingrahamii",
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                "accession": "GCA_000015285.1",
                "taxid": 357794,
                "species_taxid": 357794,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4296,
                "matched_fragments": 327,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Psychromonas hadalis",
                "strain": "strain=ATCC BAA-638",
                "accession": "GCA_000420245.1",
                "taxid": 211669,
                "species_taxid": 211669,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3752,
                "matched_fragments": 302,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Motilimonas pumila",
                "strain": "strain=PLHSC7-2",
                "accession": "GCA_003596335.1",
                "taxid": 2303987,
                "species_taxid": 2303987,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.468,
                "matched_fragments": 59,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio atlanticus",
                "strain": "strain=CECT 7223",
                "accession": "GCA_024347315.1",
                "taxid": 693153,
                "species_taxid": 693153,
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                "validated": true,
                "ani": 76.3253,
                "matched_fragments": 57,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_000381745.1",
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                "matched_fragments": 1670,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Psychromonadaceae;g__Psychromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_013619145.1",
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                "matched_fragments": 567,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Psychromonadaceae;g__Psychromonas",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
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                "accession": "GCF_002835465.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            {
                "accession": "GCF_002836415.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Psychromonadaceae;g__Psychromonas",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Psychromonadaceae;g__Psychromonas",
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                "accession": "GCF_002835995.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_000015285.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Psychromonadaceae;g__Psychromonas",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.155,
        "cell_length": 0.278,
        "doubling_h": 0.5,
        "growth_tmp": 20.0,
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        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
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        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Psychromonas",
        "ossibalaenae",
        "ATCC",
        "BAA-1528"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}