{
    "type": "genome",
    "identifier": "GCF_000381965.1",
    "organism": "Oceanimonas smirnovii ATCC BAA-899",
    "title": "Oceanimonas smirnovii ATCC BAA-899",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000381965.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02440493",
        "wgs_master": "ARMW00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1279015",
        "species_taxid": "264574",
        "organism_name": "Oceanimonas smirnovii ATCC BAA-899",
        "infraspecific_name": "strain=ATCC BAA-899",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/04/24",
        "asm_name": "ASM38196v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000381965.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/381/965/GCF_000381965.1_ASM38196v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3282720",
        "genome_size_ungapped": "3282120",
        "gc_percent": "56.000000",
        "replicon_count": "0",
        "scaffold_count": "27",
        "contig_count": "28",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000381965.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "3182",
        "protein_coding_gene_count": "3083",
        "non_coding_gene_count": "87",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-04-24",
    "dateModified": "2013-04-24",
    "datePublished": "2013-04-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Oceanimonas smirnovii ATCC BAA-899"
        ],
        "sample_taxid": [
            "1279015"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.926 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
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        "Number of Sequences": "27",
        "Longest Sequences (bp)": "591939",
        "N50 (bp)": "233562",
        "Gap Ratio (%)": "0.018278",
        "GCcontent (%)": "56.2",
        "Number of CDSs": "3081",
        "Average Protein Length": "321.7",
        "Coding Ratio (%)": "90.6",
        "Number of rRNAs": "5",
        "Number of tRNAs": "73",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
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                "species_taxid": 2059724,
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                "status": "below_threshold"
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            {
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            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanimonas doudoroffii",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanisphaera pacifica",
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                "accession": "GCA_017498065.1",
                "taxid": 2818389,
                "species_taxid": 2818389,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella jiangmenensis",
                "strain": "strain=JM162201",
                "accession": "GCA_018596335.1",
                "taxid": 2837387,
                "species_taxid": 2837387,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1913,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas capeferrum",
                "strain": "strain=WCS358",
                "accession": "GCA_022548835.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas cavernae",
                "strain": "strain=K2W31S-8",
                "accession": "GCA_003595175.1",
                "taxid": 2320867,
                "species_taxid": 2320867,
                "relation_to_type": "type",
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                "ani": 76.0541,
                "matched_fragments": 73,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Pseudomonas mangiferae",
                "strain": "strain=DMKU BBB3-04",
                "accession": "GCA_007109405.1",
                "taxid": 2593654,
                "species_taxid": 2593654,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 80,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
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            "completeness": 100.0,
            "contamination": 0.0,
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                "accession": "GCF_000381965.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Oceanimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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            },
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            {
                "accession": "GCF_000243075.1",
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            },
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        ]
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    "_bac2feature": {
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        "bacillus_cell_shape": null,
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        "coccobacillus_cell_shape": null,
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    },
    "_genome_taxon": [
        "Oceanimonas",
        "smirnovii",
        "ATCC",
        "BAA-899"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}