{
    "type": "genome",
    "identifier": "GCF_000382205.1",
    "organism": "Dyadobacter beijingensis DSM 21582",
    "title": "Dyadobacter beijingensis DSM 21582",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000382205.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441320",
        "wgs_master": "ARNI00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1121482",
        "species_taxid": "365489",
        "organism_name": "Dyadobacter beijingensis DSM 21582",
        "infraspecific_name": "strain=DSM 21582",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/04/24",
        "asm_name": "ASM38220v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000382205.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/382/205/GCF_000382205.1_ASM38220v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7376607",
        "genome_size_ungapped": "7374547",
        "gc_percent": "52.000000",
        "replicon_count": "0",
        "scaffold_count": "14",
        "contig_count": "16",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000382205.1-RS_2024_09_16",
        "annotation_date": "2024-09-16",
        "total_gene_count": "6051",
        "protein_coding_gene_count": "5968",
        "non_coding_gene_count": "50",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-04-24",
    "dateModified": "2013-04-24",
    "datePublished": "2013-04-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Dyadobacter beijingensis DSM 21582"
        ],
        "sample_taxid": [
            "1121482"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "2.091 MB",
        "sample_ph_range": {
            "min": 68.0,
            "max": 68.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 97.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7376607",
        "Number of Sequences": "14",
        "Longest Sequences (bp)": "1690098",
        "N50 (bp)": "1218747",
        "Gap Ratio (%)": "0.027926",
        "GCcontent (%)": "52.1",
        "Number of CDSs": "5976",
        "Average Protein Length": "371.3",
        "Coding Ratio (%)": "90.2",
        "Number of rRNAs": "5",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Dyadobacter beijingensis",
                "strain": "strain=DSM 21582",
                "accession": "GCA_000382205.1",
                "taxid": 365489,
                "species_taxid": 365489,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2451,
                "total_fragments": 2451,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Dyadobacter beijingensis",
                "strain": "strain=CGMCC 1.6375",
                "accession": "GCA_014645155.1",
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                "species_taxid": 365489,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9967,
                "matched_fragments": 2446,
                "total_fragments": 2451,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Dyadobacter soli",
                "strain": "strain=DSM 25329",
                "accession": "GCA_900101885.1",
                "taxid": 659014,
                "species_taxid": 659014,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6721,
                "matched_fragments": 1769,
                "total_fragments": 2451,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyadobacter fermentans",
                "strain": "strain=DSM 18053",
                "accession": "GCA_000023125.1",
                "taxid": 94254,
                "species_taxid": 94254,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.5971,
                "matched_fragments": 1546,
                "total_fragments": 2451,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyadobacter jiangsuensis",
                "strain": "strain=DSM 29057",
                "accession": "GCA_003014695.1",
                "taxid": 1591085,
                "species_taxid": 1591085,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3792,
                "matched_fragments": 1709,
                "total_fragments": 2451,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyadobacter endophyticus",
                "strain": "strain=CGMCC 1.15288",
                "accession": "GCA_014641595.1",
                "taxid": 1749036,
                "species_taxid": 1749036,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.914,
                "matched_fragments": 1622,
                "total_fragments": 2451,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 97.54,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000382205.1",
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                "ani": 100.0,
                "matched_fragments": 2451,
                "total_fragments": 2451,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900109045.1",
                "gtdb_species": "s__Dyadobacter sp900109045",
                "ani": 83.8334,
                "matched_fragments": 1764,
                "total_fragments": 2451,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900101885.1",
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                "matched_fragments": 1771,
                "total_fragments": 2451,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000023125.1",
                "gtdb_species": "s__Dyadobacter fermentans",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003014695.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017744695.1",
                "gtdb_species": "s__Dyadobacter sp017744695",
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                "total_fragments": 2451,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_001898145.1",
                "gtdb_species": "s__Dyadobacter sp001898145",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.32",
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                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.321,
        "cell_length": 0.32,
        "doubling_h": null,
        "growth_tmp": 29.0,
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        "genome_size": 7375577.0,
        "gc_content": 52.1,
        "coding_genes": 5709.667,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 38.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Dyadobacter",
        "beijingensis",
        "DSM",
        "21582"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}