{ "type": "genome", "identifier": "GCF_000382225.1", "organism": "Hymenobacter aerophilus DSM 13606", "title": "Hymenobacter aerophilus DSM 13606", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000382225.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441650", "wgs_master": "ARNJ00000000.1", "refseq_category": "reference genome", "taxid": "1121953", "species_taxid": "119644", "organism_name": "Hymenobacter aerophilus DSM 13606", "infraspecific_name": "strain=DSM 13606", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/24", "asm_name": "ASM38222v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000382225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/382/225/GCF_000382225.1_ASM38222v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4253037", "genome_size_ungapped": "4252252", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "62", "contig_count": "65", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000382225.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3823", "protein_coding_gene_count": "3741", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-24", "dateModified": "2013-04-24", "datePublished": "2013-04-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter aerophilus DSM 13606" ], "sample_taxid": [ "1121953" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy" ], "sample_host_location_id": [], "data_size": "1.186 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4253037", "Number of Sequences": "62", "Longest Sequences (bp)": "334888", "N50 (bp)": "154617", "Gap Ratio (%)": "0.018457", "GCcontent (%)": "62.1", "Number of CDSs": "3716", "Average Protein Length": "324.8", "Coding Ratio (%)": "85.1", "Number of rRNAs": "0", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter aerophilus", "strain": "strain=DSM 13606", "accession": "GCA_000382225.1", "taxid": 119644, "species_taxid": 119644, 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"below_threshold" }, { "organism_name": "Hymenobacter telluris", "strain": "strain=BT186", "accession": "GCA_017313265.1", "taxid": 2816474, "species_taxid": 2816474, "relation_to_type": "type", "validated": true, "ani": 80.1317, "matched_fragments": 778, "total_fragments": 1388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", "validated": true, "ani": 79.9594, "matched_fragments": 772, "total_fragments": 1388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallicola", "strain": "strain=9PBR-1", "accession": "GCA_004745645.1", "taxid": 2563114, "species_taxid": 2563114, "relation_to_type": "type", "validated": true, "ani": 79.7909, "matched_fragments": 780, "total_fragments": 1388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter 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298655, "species_taxid": 298655, "relation_to_type": "type", "validated": true, "ani": 74.5837, "matched_fragments": 104, "total_fragments": 1388, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000382225.1", "gtdb_species": "s__Hymenobacter aerophilus", "ani": 100.0, "matched_fragments": 1386, "total_fragments": 1388, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900111515.1", "gtdb_species": "s__Hymenobacter actinosclerus", "ani": 89.7176, "matched_fragments": 1149, "total_fragments": 1388, "gtdb_taxonomy": 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