{ "type": "genome", "identifier": "GCF_000382245.1", "organism": "Kushneria aurantia DSM 21353", "title": "Kushneria aurantia DSM 21353", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000382245.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440978", "wgs_master": "ARNK00000000.1", "refseq_category": "reference genome", "taxid": "1122139", "species_taxid": "504092", "organism_name": "Kushneria aurantia DSM 21353", "infraspecific_name": "strain=DSM 21353", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/24", "asm_name": "ASM38224v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000382245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/382/245/GCF_000382245.1_ASM38224v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3750691", "genome_size_ungapped": "3743436", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "63", "contig_count": "72", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000382245.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "3582", "protein_coding_gene_count": "3436", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-24", "dateModified": "2013-04-24", "datePublished": "2013-04-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Kushneria aurantia DSM 21353" ], "sample_taxid": [ "1122139" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Puerto Rico" ], "sample_host_location_id": [], "data_size": "1.046 MB", "sample_ph_range": { "min": 5585.0, "max": 5585.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3750691", "Number of Sequences": "63", "Longest Sequences (bp)": "322781", "N50 (bp)": "122120", "Gap Ratio (%)": "0.193431", "GCcontent (%)": "62.8", "Number of CDSs": "3446", "Average Protein Length": "317.5", "Coding Ratio (%)": "87.5", "Number of rRNAs": "2", "Number of tRNAs": "57", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kushneria aurantia", "strain": "strain=DSM 21353", "accession": "GCA_000382245.1", "taxid": 504092, "species_taxid": 504092, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1207, 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"below_threshold" }, { "organism_name": "Kushneria pakistanensis", "strain": "strain=KCTC 42082", "accession": "GCA_014652795.1", "taxid": 1508770, "species_taxid": 1508770, "relation_to_type": "type", "validated": true, "ani": 78.9473, "matched_fragments": 475, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 78.9153, "matched_fragments": 362, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lactosivorans", "strain": "strain=KCTC 52281", "accession": "GCA_003254665.1", "taxid": 2185141, "species_taxid": 2185141, "relation_to_type": "type", "validated": true, "ani": 78.8481, "matched_fragments": 353, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas urmiana", "strain": "strain=TBZ3", "accession": "GCA_005780185.1", "taxid": 490901, "species_taxid": 490901, "relation_to_type": "type", "validated": true, "ani": 78.6746, "matched_fragments": 345, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kushneria konosiri", "strain": "strain=X49", "accession": "GCA_002155145.1", "taxid": 698828, "species_taxid": 698828, "relation_to_type": "type", "validated": true, "ani": 78.65, "matched_fragments": 472, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kushneria phyllosphaerae", "strain": "strain=EAod3", "accession": "GCA_900312995.1", "taxid": 2100822, "species_taxid": 2100822, "relation_to_type": "type", "validated": true, "ani": 78.6157, "matched_fragments": 483, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 78.5653, "matched_fragments": 354, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": "strain=A4", "accession": "GCA_022341425.1", "taxid": 74661, "species_taxid": 74661, "relation_to_type": "type", "validated": true, "ani": 78.4832, "matched_fragments": 361, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas tianxiuensis", "strain": "strain=BC-M4-5", "accession": "GCA_009834345.1", "taxid": 2497861, "species_taxid": 2497861, "relation_to_type": "type", "validated": true, "ani": 78.476, "matched_fragments": 314, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas stenophila", "strain": "strain=CECT 7744", "accession": "GCA_014192275.1", "taxid": 795312, "species_taxid": 795312, 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