{
    "type": "genome",
    "identifier": "GCF_000382425.1",
    "organism": "Empedobacter brevis NBRC 14943 = ATCC 43319",
    "title": "Empedobacter brevis NBRC 14943 = ATCC 43319",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000382425.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02440982",
        "wgs_master": "ARNT00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1218108",
        "species_taxid": "247",
        "organism_name": "Empedobacter brevis NBRC 14943 = ATCC 43319",
        "infraspecific_name": "strain=ATCC 43319",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/04/24",
        "asm_name": "ASM38242v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000382425.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/382/425/GCF_000382425.1_ASM38242v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3792478",
        "genome_size_ungapped": "3790512",
        "gc_percent": "32.500000",
        "replicon_count": "0",
        "scaffold_count": "28",
        "contig_count": "32",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000382425.1-RS_2024_03_30",
        "annotation_date": "2024-03-30",
        "total_gene_count": "3605",
        "protein_coding_gene_count": "3515",
        "non_coding_gene_count": "69",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-04-24",
    "dateModified": "2013-04-24",
    "datePublished": "2013-04-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Empedobacter brevis NBRC 14943 = ATCC 43319"
        ],
        "sample_taxid": [
            "1218108"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.055 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3792478",
        "Number of Sequences": "28",
        "Longest Sequences (bp)": "614059",
        "N50 (bp)": "290273",
        "Gap Ratio (%)": "0.051839",
        "GCcontent (%)": "32.7",
        "Number of CDSs": "3527",
        "Average Protein Length": "318.7",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "7",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Empedobacter brevis",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
            {
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                "matched_fragments": 1203,
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                "status": "conclusive"
            },
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "organism_name": "Chishuiella changwenlii",
                "strain": "strain=CGMCC 1.12707",
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                "taxid": 1434701,
                "species_taxid": 1434701,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9628,
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                "total_fragments": 1249,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chishuiella changwenlii",
                "strain": "strain=DSM 27989",
                "accession": "GCA_900142565.1",
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                "species_taxid": 1434701,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 567,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacter bovis",
                "strain": "strain=ZY171143",
                "accession": "GCA_017948305.1",
                "taxid": 2898187,
                "species_taxid": 2898187,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3948,
                "matched_fragments": 376,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacter macacae",
                "strain": "strain=YIM 102668",
                "accession": "GCA_003687725.1",
                "taxid": 1859289,
                "species_taxid": 1859289,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 390,
                "total_fragments": 1249,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium soyae",
                "strain": "strain=SCIV07",
                "accession": "GCA_021245985.1",
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                "species_taxid": 2903098,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum todarodis",
                "strain": "strain=LPB0136",
                "accession": "GCA_001889045.1",
                "taxid": 1850252,
                "species_taxid": 1850252,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7129,
                "matched_fragments": 53,
                "total_fragments": 1249,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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            {
                "accession": "GCF_000382425.1",
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                "matched_fragments": 1247,
                "total_fragments": 1249,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Empedobacter",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 7,
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            {
                "accession": "GCA_002378465.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Empedobacter",
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                "min_intra_species_ani": "95.90",
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            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_013488205.1",
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                "num_clustered_genomes": 9,
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                "mean_intra_species_ani": "99.07",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Algoriella",
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                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCF_900142565.1",
                "gtdb_species": "s__Chishuiella changwenlii",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chishuiella",
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
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        "optimum_tmp": null,
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        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 0.0,
        "sporulation": null,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Empedobacter",
        "brevis",
        "NBRC",
        "14943",
        "=",
        "ATCC",
        "43319"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}