{
    "type": "genome",
    "identifier": "GCF_000382905.1",
    "organism": "Corynebacterium glutamicum K051",
    "title": "Corynebacterium glutamicum K051",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Forschungszentrum Juelich GmbH",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000382905.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA3138433",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "1204414",
        "species_taxid": "1718",
        "organism_name": "Corynebacterium glutamicum K051",
        "infraspecific_name": "strain=ATCC 13032 substr. K051",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/04/23",
        "asm_name": "ASM38290v1",
        "asm_submitter": "Forschungszentrum Juelich GmbH",
        "gbrs_paired_asm": "GCA_000382905.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/382/905/GCF_000382905.1_ASM38290v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3309400",
        "genome_size_ungapped": "3309400",
        "gc_percent": "54.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-17",
        "total_gene_count": "3082",
        "protein_coding_gene_count": "2958",
        "non_coding_gene_count": "80",
        "pubmed_id": "22640862"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-04-23",
    "dateModified": "2012-04-23",
    "datePublished": "2012-04-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corynebacterium glutamicum K051"
        ],
        "sample_taxid": [
            "1204414"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.940 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3309400",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3309400",
        "N50 (bp)": "3309400",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.8",
        "Number of CDSs": "3089",
        "Average Protein Length": "308.9",
        "Coding Ratio (%)": "86.5",
        "Number of rRNAs": "18",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Corynebacterium glutamicum",
                "strain": "strain=ATCC 13032 substr. K051",
                "accession": "GCA_000382905.1",
                "taxid": 1718,
                "species_taxid": 1718,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1103,
                "total_fragments": 1103,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium glutamicum",
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                "accession": "GCA_000011325.1",
                "taxid": 1718,
                "species_taxid": 1718,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9888,
                "matched_fragments": 1103,
                "total_fragments": 1103,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium glutamicum",
                "strain": "strain=ATCC 13032",
                "accession": "GCA_002847405.1",
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                "species_taxid": 1718,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9806,
                "matched_fragments": 1103,
                "total_fragments": 1103,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium glutamicum",
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                "accession": "GCA_011761195.1",
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                "species_taxid": 1718,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.4505,
                "matched_fragments": 961,
                "total_fragments": 1103,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium suranareeae",
                "strain": "strain=N24",
                "accession": "GCA_002355155.1",
                "taxid": 2506452,
                "species_taxid": 2506452,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9542,
                "matched_fragments": 911,
                "total_fragments": 1103,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium crudilactis",
                "strain": "strain=JZ16",
                "accession": "GCA_001643015.1",
                "taxid": 1652495,
                "species_taxid": 1652495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8587,
                "matched_fragments": 772,
                "total_fragments": 1103,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000011325.1",
                "gtdb_species": "s__Corynebacterium glutamicum",
                "ani": 99.9888,
                "matched_fragments": 1103,
                "total_fragments": 1103,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.67",
                "min_intra_species_ani": "97.34",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 76,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002355155.1",
                "gtdb_species": "s__Corynebacterium suranareeae",
                "ani": 85.9654,
                "matched_fragments": 909,
                "total_fragments": 1103,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001643015.1",
                "gtdb_species": "s__Corynebacterium crudilactis",
                "ani": 83.8418,
                "matched_fragments": 773,
                "total_fragments": 1103,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001277995.1",
                "gtdb_species": "s__Corynebacterium deserti",
                "ani": 83.338,
                "matched_fragments": 667,
                "total_fragments": 1103,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000344785.1",
                "gtdb_species": "s__Corynebacterium callunae",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000011305.1",
                "gtdb_species": "s__Corynebacterium efficiens",
                "ani": 79.2544,
                "matched_fragments": 345,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.90",
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                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_009734425.1",
                "gtdb_species": "s__Corynebacterium sp009734425",
                "ani": 78.5107,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": 0.0,
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        "growth_tmp": 30.167,
        "optimum_tmp": 32.077,
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        "gc_content": 53.931,
        "coding_genes": 2922.294,
        "rRNA16S_genes": 5.818,
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        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 1.0,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Corynebacterium",
        "glutamicum",
        "K051"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}