{ "type": "genome", "identifier": "GCF_000383775.1", "organism": "Saccharomonospora halophila 8", "title": "Saccharomonospora halophila 8", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000383775.1", "bioproject": "PRJNA224116", "biosample": "SAMN02256397", "wgs_master": "AICX00000000.1", "refseq_category": "reference genome", "taxid": "928729", "species_taxid": "129922", "organism_name": "Saccharomonospora halophila 8", "infraspecific_name": "strain=8", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/26", "asm_name": "ASM38377v1", "asm_submitter": "Joint Genome Institute", "gbrs_paired_asm": "GCA_000383775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/383/775/GCF_000383775.1_ASM38377v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3685023", "genome_size_ungapped": "3632223", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "116", "contig_count": "644", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000383775.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "3868", "protein_coding_gene_count": "3520", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-26", "dateModified": "2013-04-26", "datePublished": "2013-04-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Saccharomonospora halophila 8" ], "sample_taxid": [ "928729" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Kuwait" ], "sample_host_location_id": [], "data_size": "0.986 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3685023", "Number of Sequences": "116", "Longest Sequences (bp)": "186051", "N50 (bp)": "69647", "Gap Ratio (%)": "1.432881", "GCcontent (%)": "70.9", "Number of CDSs": "3347", "Average Protein Length": "296.4", "Coding Ratio (%)": "80.8", "Number of rRNAs": "5", "Number of tRNAs": "50", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Saccharomonospora halophila", "strain": "strain=8", "accession": "GCA_000383775.1", "taxid": 129922, "species_taxid": 129922, "relation_to_type": "type", "validated": true, "ani": 99.9999, "matched_fragments": 1162, "total_fragments": 1168, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Saccharomonospora iraqiensis subsp. paurometabolica", "strain": "strain=YIM 90007", "accession": "GCA_000231035.3", "taxid": 208085, "species_taxid": 52698, "relation_to_type": "type", "validated": true, "ani": 93.4926, "matched_fragments": 982, "total_fragments": 1168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharomonospora iraqiensis", "strain": "strain=IQ-H1", "accession": "GCA_000430445.1", "taxid": 52698, "species_taxid": 52698, "relation_to_type": "type", "validated": true, "ani": 93.4301, "matched_fragments": 914, "total_fragments": 1168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharomonospora saliphila", "strain": "strain=YIM 90502", "accession": "GCA_000383795.1", "taxid": 369829, "species_taxid": 369829, "relation_to_type": "type", "validated": true, "ani": 83.2804, "matched_fragments": 735, "total_fragments": 1168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharomonospora piscinae", "strain": "strain=KCTC 19743", "accession": "GCA_005862235.1", "taxid": 687388, "species_taxid": 687388, "relation_to_type": "type", "validated": true, "ani": 80.6092, "matched_fragments": 665, "total_fragments": 1168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharomonospora azurea", "strain": "strain=NA-128", "accession": "GCA_000231055.3", "taxid": 40988, "species_taxid": 40988, "relation_to_type": "type", "validated": true, "ani": 80.5903, "matched_fragments": 650, "total_fragments": 1168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharomonospora cyanea", "strain": "strain=NA-134", "accession": "GCA_000244975.1", "taxid": 40989, "species_taxid": 40989, "relation_to_type": "type", "validated": true, "ani": 80.4604, "matched_fragments": 674, "total_fragments": 1168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis arida", "strain": "strain=DSM 45648", "accession": "GCA_004365925.1", "taxid": 587909, "species_taxid": 587909, "relation_to_type": "type", "validated": true, "ani": 79.9613, "matched_fragments": 624, "total_fragments": 1168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis arida", "strain": "strain=CGMCC 4.5579", "accession": "GCA_900115565.1", "taxid": 587909, "species_taxid": 587909, "relation_to_type": "type", "validated": true, "ani": 79.8578, "matched_fragments": 633, "total_fragments": 1168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella cavernicola", "strain": "strain=ASG 168", "accession": "GCA_016595675.1", "taxid": 2800127, "species_taxid": 2800127, "relation_to_type": "type", "validated": true, "ani": 79.8575, "matched_fragments": 634, "total_fragments": 1168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella aidingensis", "strain": "strain=DSM 45266", "accession": "GCA_024171865.1", "taxid": 387890, "species_taxid": 387890, "relation_to_type": "type", "validated": true, "ani": 79.7161, "matched_fragments": 580, "total_fragments": 1168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermalba", "strain": "strain=NRRL B-24845", "accession": "GCA_003385215.1", "taxid": 944492, "species_taxid": 944492, "relation_to_type": "type", "validated": true, "ani": 79.23, "matched_fragments": 626, "total_fragments": 1168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acidiphila", "strain": "strain=KCTC 39523", "accession": "GCA_021391495.1", "taxid": 715473, "species_taxid": 715473, "relation_to_type": "type", "validated": true, "ani": 79.147, "matched_fragments": 586, "total_fragments": 1168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis alkalitolerans", "strain": "strain=SYSUP0005", "accession": "GCA_006152065.1", "taxid": 2547244, "species_taxid": 2547244, "relation_to_type": "type", "validated": true, "ani": 78.9345, "matched_fragments": 502, "total_fragments": 1168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora globicatena", "strain": "strain=DSM 44256", "accession": "GCA_024171945.1", "taxid": 103729, "species_taxid": 103729, "relation_to_type": "type", "validated": true, "ani": 78.1369, "matched_fragments": 458, "total_fragments": 1168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloechinothrix aidingensis", "strain": "strain=YIM 98757", "accession": "GCA_013450155.1", "taxid": 2752311, "species_taxid": 2752311, "relation_to_type": "type", "validated": true, "ani": 78.1195, "matched_fragments": 426, "total_fragments": 1168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, 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