{ "type": "genome", "identifier": "GCF_000383855.1", "organism": "Methylobacter marinus A45", "title": "Methylobacter marinus A45", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000383855.1", "bioproject": "PRJNA224116", "biosample": "SAMN02261244", "wgs_master": "ARVS00000000.1", "refseq_category": "reference genome", "taxid": "674036", "species_taxid": "34058", "organism_name": "Methylobacter marinus A45", "infraspecific_name": "strain=A45", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/26", "asm_name": "ASM38385v1", "asm_submitter": "JGI", "gbrs_paired_asm": "GCA_000383855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/383/855/GCF_000383855.1_ASM38385v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4988792", "genome_size_ungapped": "4987882", "gc_percent": "52.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "11", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000383855.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "4526", "protein_coding_gene_count": "4433", "non_coding_gene_count": "64", "pubmed_id": "26798114" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-26", "dateModified": "2013-04-26", "datePublished": "2013-04-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacter marinus A45" ], "sample_taxid": [ "674036" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Missing" ], "sample_host_location_id": [], "data_size": "1.409 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 89.87, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4988792", "Number of Sequences": "2", "Longest Sequences (bp)": "4984690", "N50 (bp)": "4984690", "Gap Ratio (%)": "0.018762", "GCcontent (%)": "52.7", "Number of CDSs": "4517", "Average Protein Length": "315.5", "Coding Ratio (%)": "85.7", "Number of rRNAs": "9", "Number of tRNAs": "50", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylobacter marinus", "strain": "strain=A45", "accession": "GCA_000383855.1", "taxid": 34058, "species_taxid": 34058, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1662, "total_fragments": 1662, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methylobacter tundripaludum", "strain": "strain=SV96", "accession": "GCA_000190755.3", "taxid": 173365, "species_taxid": 173365, "relation_to_type": "type", "validated": true, "ani": 78.002, "matched_fragments": 395, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylosarcina fibrata", "strain": "strain=AML-C10", "accession": "GCA_000372865.1", "taxid": 105972, "species_taxid": 105972, "relation_to_type": "type", "validated": true, "ani": 77.757, "matched_fragments": 272, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylicorpusculum oleiharenae", "strain": "strain=XLMV4", "accession": "GCA_009828925.2", "taxid": 1338687, "species_taxid": 1338687, "relation_to_type": "type", "validated": true, "ani": 77.6413, "matched_fragments": 139, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylomicrobium lacus", "strain": "strain=LW14", "accession": "GCA_000527095.1", "taxid": 136992, "species_taxid": 136992, "relation_to_type": "type", "validated": true, "ani": 77.4665, "matched_fragments": 293, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylovulum miyakonense", "strain": "strain=HT12", "accession": "GCA_000384075.1", "taxid": 645578, "species_taxid": 645578, "relation_to_type": "type", "validated": true, "ani": 77.2426, "matched_fragments": 168, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenothrix polyspora", "strain": "", "accession": "GCA_900163755.1", "taxid": 360316, "species_taxid": 360316, "relation_to_type": "reftype", "validated": true, "ani": 77.2314, "matched_fragments": 77, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylomarinum vadi", "strain": "strain=IT-4", "accession": "GCA_000733935.1", "taxid": 438855, "species_taxid": 438855, "relation_to_type": "type", "validated": true, "ani": 77.1817, "matched_fragments": 219, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylomonas koyamae", "strain": "strain=Fw12E-Y", "accession": "GCA_019669905.1", "taxid": 702114, "species_taxid": 702114, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1432, "matched_fragments": 179, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_024169805.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 76.9726, "matched_fragments": 58, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas nitrititolerans", "strain": "strain=GL14", "accession": "GCA_003696285.1", "taxid": 2482751, "species_taxid": 2482751, "relation_to_type": "type", "validated": true, 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"num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_000427625.1", "gtdb_species": "s__Methylobacter luteus", "ani": 84.8171, "matched_fragments": 1105, "total_fragments": 1662, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015476545.1", "gtdb_species": "s__Methylobacter sp015476545", "ani": 83.5152, "matched_fragments": 985, "total_fragments": 1662, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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