{
    "type": "genome",
    "identifier": "GCF_000383875.1",
    "organism": "Caldibacillus debilis DSM 16016",
    "title": "Caldibacillus debilis DSM 16016",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000383875.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02256402",
        "wgs_master": "ARVR00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1121917",
        "species_taxid": "301148",
        "organism_name": "Caldibacillus debilis DSM 16016",
        "infraspecific_name": "strain=DSM 16016",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/04/26",
        "asm_name": "ASM38387v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000383875.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/383/875/GCF_000383875.1_ASM38387v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3059517",
        "genome_size_ungapped": "3057066",
        "gc_percent": "51.500000",
        "replicon_count": "0",
        "scaffold_count": "40",
        "contig_count": "42",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000383875.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "2793",
        "protein_coding_gene_count": "2655",
        "non_coding_gene_count": "73",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-04-26",
    "dateModified": "2013-04-26",
    "datePublished": "2013-04-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Caldibacillus debilis DSM 16016"
        ],
        "sample_taxid": [
            "1121917"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Ireland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.857 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3059517",
        "Number of Sequences": "40",
        "Longest Sequences (bp)": "438389",
        "N50 (bp)": "152056",
        "Gap Ratio (%)": "0.081516",
        "GCcontent (%)": "51.6",
        "Number of CDSs": "2822",
        "Average Protein Length": "282.3",
        "Coding Ratio (%)": "78.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "8"
    },
    "has_analysis": true,
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                "validated": true,
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            },
            {
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                "species_taxid": 1674942,
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                "validated": true,
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                "matched_fragments": 75,
                "total_fragments": 1001,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geobacillus stearothermophilus",
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                "species_taxid": 1422,
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                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_000383875.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__DSM-16016;f__Caldibacillaceae;g__Caldibacillus",
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                "total_fragments": 1001,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Sporolactobacillaceae;g__Caenibacillus",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "ani_circumscription_radius": 95.0,
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            },
            {
                "accession": "GCF_000948285.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
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            },
            {
                "accession": "GCA_002243605.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus",
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            },
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                "accession": "GCF_002809955.1",
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.274,
        "cell_length": 0.564,
        "doubling_h": null,
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        "optimum_tmp": 65.0,
        "optimum_ph": 7.2,
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        "gc_content": 51.391,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
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        "mesophilic_range_tmp": 0.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Caldibacillus",
        "debilis",
        "DSM",
        "16016"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}