{ "type": "genome", "identifier": "GCF_000384035.1", "organism": "Actinopolyspora mortivallis DSM 44261", "title": "Actinopolyspora mortivallis DSM 44261", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000384035.1", "bioproject": "PRJNA224116", "biosample": "SAMN02261292", "wgs_master": "AQZN00000000.1", "refseq_category": "reference genome", "taxid": "1050202", "species_taxid": "33906", "organism_name": "Actinopolyspora mortivallis DSM 44261", "infraspecific_name": "strain=HS-1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/26", "asm_name": "ASM38403v1", "asm_submitter": "JGI", "gbrs_paired_asm": "GCA_000384035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/384/035/GCF_000384035.1_ASM38403v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4233350", "genome_size_ungapped": "4231650", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000384035.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "3949", "protein_coding_gene_count": "3817", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-26", "dateModified": "2013-04-26", "datePublished": "2013-04-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinopolyspora mortivallis DSM 44261" ], "sample_taxid": [ "1050202" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.148 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4233350", "Number of Sequences": "1", "Longest Sequences (bp)": "4233350", "N50 (bp)": "4233350", "Gap Ratio (%)": "0.040512", "GCcontent (%)": "68.8", "Number of CDSs": "3951", "Average Protein Length": "305.3", "Coding Ratio (%)": "85.5", "Number of rRNAs": "10", "Number of tRNAs": "57", "Number of CRISPRs": "16" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinopolyspora mortivallis", "strain": "strain=HS-1", "accession": "GCA_000384035.1", "taxid": 33906, "species_taxid": 33906, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1410, "total_fragments": 1411, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinopolyspora saharensis", "strain": "strain=DSM 45459", "accession": "GCA_900100925.1", "taxid": 995062, "species_taxid": 995062, "relation_to_type": "type", "validated": true, "ani": 83.3846, "matched_fragments": 1039, "total_fragments": 1411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolyspora biskrensis", "strain": "strain=CECT 8576", "accession": "GCA_013408175.1", "taxid": 1470178, "species_taxid": 1470178, "relation_to_type": "type", "validated": true, "ani": 83.1396, "matched_fragments": 1029, "total_fragments": 1411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolyspora halophila", "strain": "strain=DSM 43834", "accession": "GCA_000371785.1", "taxid": 1850, "species_taxid": 1850, "relation_to_type": "type", "validated": true, "ani": 82.9105, "matched_fragments": 1040, "total_fragments": 1411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolyspora erythraea", "strain": "strain=YIM 90600", "accession": "GCA_002263515.1", "taxid": 414996, "species_taxid": 414996, "relation_to_type": "type", "validated": true, "ani": 81.9803, "matched_fragments": 969, "total_fragments": 1411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolyspora erythraea", "strain": "strain=YIM 90600", "accession": "GCA_000763095.1", "taxid": 414996, "species_taxid": 414996, "relation_to_type": "type", "validated": true, "ani": 81.9109, "matched_fragments": 967, "total_fragments": 1411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolyspora xinjiangensis", "strain": "strain=DSM 46732", "accession": "GCA_900104475.1", "taxid": 405564, "species_taxid": 405564, "relation_to_type": "type", "validated": true, "ani": 81.8853, "matched_fragments": 952, "total_fragments": 1411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolyspora alba", "strain": "strain=DSM 45004", "accession": "GCA_900112765.1", "taxid": 673379, "species_taxid": 673379, "relation_to_type": "type", "validated": true, "ani": 81.5705, "matched_fragments": 920, "total_fragments": 1411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolyspora righensis", "strain": "strain=DSM 45501", "accession": "GCA_900116555.1", "taxid": 995060, "species_taxid": 995060, "relation_to_type": "type", "validated": true, "ani": 81.2276, "matched_fragments": 912, "total_fragments": 1411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora hordei", "strain": "strain=DSM 44065", "accession": "GCA_013410345.1", "taxid": 1838, "species_taxid": 1838, "relation_to_type": "type", "validated": true, "ani": 79.0858, "matched_fragments": 595, "total_fragments": 1411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora dendranthemae", "strain": "strain=DSM 46699", "accession": "GCA_007829955.1", "taxid": 1181886, "species_taxid": 1181886, "relation_to_type": "type", "validated": true, "ani": 78.6049, "matched_fragments": 536, "total_fragments": 1411, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000384035.1", "gtdb_species": "s__Actinopolyspora mortivallis", "ani": 100.0, "matched_fragments": 1410, "total_fragments": 1411, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.34", "min_intra_species_ani": "95.34", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900100925.1", "gtdb_species": "s__Actinopolyspora saharensis", "ani": 83.3915, "matched_fragments": 1038, "total_fragments": 1411, 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