{ "type": "genome", "identifier": "GCF_000384295.1", "organism": "Amycolatopsis balhimycina FH 1894", "title": "Amycolatopsis balhimycina FH 1894", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000384295.1", "bioproject": "PRJNA224116", "biosample": "SAMN02256403", "wgs_master": "ARBH00000000.1", "refseq_category": "reference genome", "taxid": "1089545", "species_taxid": "208443", "organism_name": "Amycolatopsis balhimycina FH 1894", "infraspecific_name": "strain=DSM 44591", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/26", "asm_name": "ASM38429v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000384295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/384/295/GCF_000384295.1_ASM38429v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10858503", "genome_size_ungapped": "10857603", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000384295.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "9898", "protein_coding_gene_count": "9696", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-26", "dateModified": "2013-04-26", "datePublished": "2013-04-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Amycolatopsis balhimycina FH 1894" ], "sample_taxid": [ "1089545" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "India" ], "sample_host_location_id": [], "data_size": "2.901 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.78, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10858503", "Number of Sequences": "1", "Longest Sequences (bp)": "10858503", "N50 (bp)": "10858503", "Gap Ratio (%)": "0.008344", "GCcontent (%)": "70.8", "Number of CDSs": "9905", "Average Protein Length": "332.4", "Coding Ratio (%)": "91.0", "Number of rRNAs": "12", "Number of tRNAs": "81", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Amycolatopsis balhimycina", "strain": "strain=DSM 44591", "accession": "GCA_000384295.1", "taxid": 208443, "species_taxid": 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"ani": 89.7727, "matched_fragments": 2139, "total_fragments": 3619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis rifamycinica", "strain": "strain=DSM 46095", "accession": "GCA_000695625.1", "taxid": 287986, "species_taxid": 287986, "relation_to_type": "type", "validated": true, "ani": 89.6842, "matched_fragments": 2289, "total_fragments": 3619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis vancoresmycina", "strain": "strain=NRRL B-24208", "accession": "GCA_000716785.1", "taxid": 208444, "species_taxid": 208444, "relation_to_type": "type", "validated": true, "ani": 89.6204, "matched_fragments": 2425, "total_fragments": 3619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis vancoresmycina", "strain": "strain=DSM 44592", "accession": "GCA_000388135.1", "taxid": 208444, "species_taxid": 208444, "relation_to_type": "type", "validated": true, "ani": 89.5918, "matched_fragments": 2029, "total_fragments": 3619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis tolypomycina", "strain": "strain=DSM 44544", "accession": "GCA_900105945.1", "taxid": 208445, "species_taxid": 208445, "relation_to_type": "type", "validated": true, "ani": 89.4706, "matched_fragments": 2475, "total_fragments": 3619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis lexingtonensis", "strain": "strain=NRRL B-24131", "accession": "GCA_002156005.1", "taxid": 218822, "species_taxid": 218822, "relation_to_type": "type", "validated": true, "ani": 88.6068, "matched_fragments": 2134, "total_fragments": 3619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis eburnea", "strain": "strain=GLM-1", "accession": "GCA_003937945.1", "taxid": 2267691, "species_taxid": 2267691, "relation_to_type": "type", "validated": true, "ani": 88.5584, "matched_fragments": 2372, "total_fragments": 3619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis camponoti", "strain": "strain=A23", "accession": "GCA_902497555.1", "taxid": 2606593, "species_taxid": 2606593, "relation_to_type": "type", "validated": true, "ani": 88.5534, "matched_fragments": 2461, "total_fragments": 3619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis pretoriensis", "strain": "strain=NRRL B-24133", "accession": "GCA_002156025.1", "taxid": 218821, "species_taxid": 218821, "relation_to_type": "type", "validated": true, "ani": 88.3035, "matched_fragments": 2144, "total_fragments": 3619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermalba", "strain": "strain=NRRL B-24845", "accession": "GCA_003385215.1", "taxid": 944492, "species_taxid": 944492, "relation_to_type": "type", "validated": true, "ani": 80.2532, "matched_fragments": 1245, "total_fragments": 3619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella cavernicola", "strain": "strain=ASG 168", "accession": "GCA_016595675.1", "taxid": 2800127, "species_taxid": 2800127, "relation_to_type": "type", "validated": true, "ani": 79.0718, "matched_fragments": 1118, "total_fragments": 3619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis aidingensis", "strain": "strain=YIM 96748", "accession": "GCA_018885265.1", "taxid": 2842453, "species_taxid": 2842453, "relation_to_type": "type", "validated": true, "ani": 78.5956, "matched_fragments": 1121, "total_fragments": 3619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora globicatena", "strain": "strain=DSM 44256", "accession": "GCA_024171945.1", "taxid": 103729, "species_taxid": 103729, "relation_to_type": "type", "validated": true, "ani": 78.1294, "matched_fragments": 956, "total_fragments": 3619, "ani_threshold": 95, "status": "below_threshold" } ], 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