{
    "type": "genome",
    "identifier": "GCF_000385215.1",
    "organism": "Thioalkalivibrio thiocyanoxidans ARh2",
    "title": "Thioalkalivibrio thiocyanoxidans ARh2",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000385215.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441309",
        "wgs_master": "ARQK00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1279019",
        "species_taxid": "152475",
        "organism_name": "Thioalkalivibrio thiocyanoxidans ARh2",
        "infraspecific_name": "strain=ARh2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/04/26",
        "asm_name": "ASM38521v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000385215.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/385/215/GCF_000385215.1_ASM38521v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2765337",
        "genome_size_ungapped": "2765337",
        "gc_percent": "66.000000",
        "replicon_count": "0",
        "scaffold_count": "61",
        "contig_count": "61",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000385215.1-RS_2024_04_22",
        "annotation_date": "2024-04-22",
        "total_gene_count": "2664",
        "protein_coding_gene_count": "2578",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-04-26",
    "dateModified": "2013-04-26",
    "datePublished": "2013-04-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thioalkalivibrio thiocyanoxidans ARh2"
        ],
        "sample_taxid": [
            "1279019"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.770 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2765337",
        "Number of Sequences": "61",
        "Longest Sequences (bp)": "180651",
        "N50 (bp)": "76349",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.2",
        "Number of CDSs": "2602",
        "Average Protein Length": "316.1",
        "Coding Ratio (%)": "89.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Thioalkalivibrio thiocyanoxidans",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thioalkalivibrio versutus",
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                "species_taxid": 106634,
                "relation_to_type": "type",
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                "ani": 83.5539,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalkalivibrio halophilus",
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                "accession": "GCA_001995255.1",
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                "matched_fragments": 481,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_000227685.3",
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                "species_taxid": 108010,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 295,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalkalivibrio nitratireducens",
                "strain": "strain=DSM 14787",
                "accession": "GCA_000321415.2",
                "taxid": 186931,
                "species_taxid": 186931,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8595,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalkalivibrio sulfidiphilus",
                "strain": "strain=HL-EbGR7",
                "accession": "GCA_000021985.1",
                "taxid": 1033854,
                "species_taxid": 1033854,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3884,
                "matched_fragments": 280,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiohalobacter thiocyanaticus",
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                "accession": "GCA_003932505.1",
                "taxid": 585455,
                "species_taxid": 585455,
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalkalivibrio thiocyanodenitrificans",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aromaticivorans",
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                "accession": "GCA_019097855.1",
                "taxid": 2849492,
                "species_taxid": 2849492,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.523,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylonatrum kenyense",
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                "accession": "GCA_023195885.1",
                "taxid": 455253,
                "species_taxid": 455253,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas lalucatii",
                "strain": "strain=R1b54",
                "accession": "GCA_018398425.1",
                "taxid": 1424203,
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas furukawaii",
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                "accession": "GCA_000262065.3",
                "taxid": 1149133,
                "species_taxid": 1149133,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0117,
                "matched_fragments": 119,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas salinisoli",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas insulae",
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                "accession": "GCA_016901015.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacterium aestuarii",
                "strain": "strain=ST58-10",
                "accession": "GCA_001651805.1",
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                "accession": "GCF_000378605.1",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "thiocyanoxidans",
        "ARh2"
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}