{
    "type": "genome",
    "identifier": "GCF_000387565.1",
    "organism": "Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046",
    "title": "Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Copenhagen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000387565.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02471706",
        "wgs_master": "ALPY00000000.1",
        "refseq_category": "na",
        "taxid": "1217420",
        "species_taxid": "1584",
        "organism_name": "Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046",
        "infraspecific_name": "strain=ZN7a-9",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/05/02",
        "asm_name": "ASM38756v1",
        "asm_submitter": "University of Copenhagen",
        "gbrs_paired_asm": "GCA_000387565.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/387/565/GCF_000387565.1_ASM38756v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1730812",
        "genome_size_ungapped": "1730812",
        "gc_percent": "50.000000",
        "replicon_count": "0",
        "scaffold_count": "75",
        "contig_count": "75",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000387565.1-RS_2024_07_29",
        "annotation_date": "2024-07-29",
        "total_gene_count": "1767",
        "protein_coding_gene_count": "1621",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-05-02",
    "dateModified": "2013-05-02",
    "datePublished": "2013-05-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046"
        ],
        "sample_taxid": [
            "1217420"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Burkina Faso: Center, Ouagadougou"
        ],
        "sample_host_location_id": [],
        "data_size": "0.493 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1730812",
        "Number of Sequences": "75",
        "Longest Sequences (bp)": "154976",
        "N50 (bp)": "57175",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.2",
        "Number of CDSs": "1717",
        "Average Protein Length": "290.8",
        "Coding Ratio (%)": "86.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Lactobacillus delbrueckii subsp. jakobsenii",
                "strain": "strain=ZN7a-9",
                "accession": "GCA_000387565.1",
                "taxid": 1537158,
                "species_taxid": 1584,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 546,
                "total_fragments": 551,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus delbrueckii subsp. jakobsenii",
                "strain": "strain=DSM 26046",
                "accession": "GCA_001888925.1",
                "taxid": 1537158,
                "species_taxid": 1584,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9935,
                "matched_fragments": 550,
                "total_fragments": 551,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus delbrueckii subsp. jakobsenii",
                "strain": "strain=DSM 26046",
                "accession": "GCA_004354615.1",
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                "species_taxid": 1584,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9838,
                "matched_fragments": 551,
                "total_fragments": 551,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus delbrueckii subsp. jakobsenii",
                "strain": "strain=DSM 26046",
                "accession": "GCA_001437485.1",
                "taxid": 1537158,
                "species_taxid": 1584,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.976,
                "matched_fragments": 539,
                "total_fragments": 551,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus delbrueckii subsp. delbrueckii",
                "strain": "strain=NBRC 3202",
                "accession": "GCA_006740305.1",
                "taxid": 83684,
                "species_taxid": 1584,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 98.486,
                "matched_fragments": 520,
                "total_fragments": 551,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus delbrueckii subsp. delbrueckii",
                "strain": "strain=DSM 20074",
                "accession": "GCA_001433875.1",
                "taxid": 83684,
                "species_taxid": 1584,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 97.7193,
                "matched_fragments": 462,
                "total_fragments": 551,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus delbrueckii subsp. bulgaricus",
                "strain": "strain=NBRC 13953",
                "accession": "GCA_006539405.1",
                "taxid": 1585,
                "species_taxid": 1584,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.1448,
                "matched_fragments": 461,
                "total_fragments": 551,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus delbrueckii subsp. bulgaricus",
                "strain": "strain=ATCC 11842",
                "accession": "GCA_000056065.1",
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                "species_taxid": 1584,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.0854,
                "matched_fragments": 485,
                "total_fragments": 551,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus equicursoris",
                "strain": "strain=JCM 14600",
                "accession": "GCA_001311765.1",
                "taxid": 420645,
                "species_taxid": 420645,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3458,
                "matched_fragments": 349,
                "total_fragments": 551,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001433875.1",
                "gtdb_species": "s__Lactobacillus delbrueckii",
                "ani": 97.7193,
                "matched_fragments": 462,
                "total_fragments": 551,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.56",
                "min_intra_species_ani": "96.59",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 103,
                "status": "conclusive"
            },
            {
                "accession": "GCA_004556255.1",
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                "ani": 94.5419,
                "matched_fragments": 333,
                "total_fragments": 551,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016587775.1",
                "gtdb_species": "s__Lactobacillus nasalidis",
                "ani": 87.1562,
                "matched_fragments": 334,
                "total_fragments": 551,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.92",
                "min_intra_species_ani": "99.91",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_009695985.1",
                "gtdb_species": "s__Lactobacillus porci",
                "ani": 82.2467,
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                "total_fragments": 551,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.72",
                "min_intra_species_ani": "97.20",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001434815.1",
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                "ani": 82.2228,
                "matched_fragments": 355,
                "total_fragments": 551,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.84",
                "min_intra_species_ani": "97.67",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.795,
        "doubling_h": 0.0,
        "growth_tmp": 37.889,
        "optimum_tmp": 40.286,
        "optimum_ph": 4.0,
        "genome_size": 1919149.397,
        "gc_content": 49.72,
        "coding_genes": 1710.348,
        "rRNA16S_genes": 9.0,
        "tRNA_genes": 95.842,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Lactobacillus",
        "delbrueckii",
        "subsp.",
        "jakobsenii",
        "ZN7a-9",
        "=",
        "DSM",
        "26046"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}