{ "type": "genome", "identifier": "GCF_000388115.1", "organism": "Aeromonas molluscorum 848", "title": "Aeromonas molluscorum 848", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universitat de Barcelona", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000388115.1", "bioproject": "PRJNA224116", "biosample": "SAMN02471397", "wgs_master": "AQGQ00000000.1", "refseq_category": "reference genome", "taxid": "1268236", "species_taxid": "271417", "organism_name": "Aeromonas molluscorum 848", "infraspecific_name": "strain=848", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/05/03", "asm_name": "Amol1.0", "asm_submitter": "Universitat de Barcelona", "gbrs_paired_asm": "GCA_000388115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/388/115/GCF_000388115.1_Amol1.0", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4236171", "genome_size_ungapped": "4236171", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "309", "contig_count": "309", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000388115.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4141", "protein_coding_gene_count": "3779", "non_coding_gene_count": "75", "pubmed_id": "23788549" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-05-03", "dateModified": "2013-05-03", "datePublished": "2013-05-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Aeromonas molluscorum 848" ], "sample_taxid": [ "1268236" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "1.201 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4236171", "Number of Sequences": "309", "Longest Sequences (bp)": "138647", "N50 (bp)": "21565", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.2", "Number of CDSs": "3848", "Average Protein Length": "293.1", "Coding Ratio (%)": "79.9", "Number of rRNAs": "1", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aeromonas molluscorum", "strain": "strain=848", "accession": "GCA_000388115.1", "taxid": 271417, "species_taxid": 271417, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1240, "total_fragments": 1253, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aeromonas rivuli", "strain": "strain=DSM 22539", "accession": "GCA_000820045.1", "taxid": 648794, "species_taxid": 648794, "relation_to_type": "type", "validated": true, "ani": 91.228, "matched_fragments": 1065, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas bivalvium", "strain": "strain=CECT 7113", "accession": "GCA_000819765.1", "taxid": 440079, "species_taxid": 440079, "relation_to_type": "type", "validated": true, "ani": 86.7972, "matched_fragments": 1021, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas bestiarum", "strain": "strain=CECT 4227", "accession": "GCA_000819745.1", "taxid": 105751, "species_taxid": 105751, "relation_to_type": "type", "validated": true, "ani": 84.5012, "matched_fragments": 926, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas encheleia", 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"GCA_000447435.2", "taxid": 96473, "species_taxid": 645, "relation_to_type": "type", "validated": true, "ani": 84.1895, "matched_fragments": 889, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas hydrophila subsp. hydrophila", "strain": "strain=ATCC 7966", "accession": "GCA_000014805.1", "taxid": 196023, "species_taxid": 644, "relation_to_type": "type", "validated": true, "ani": 83.9918, "matched_fragments": 936, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas aquatica", "strain": "strain=AE235", "accession": "GCA_000764655.1", "taxid": 558964, "species_taxid": 558964, "relation_to_type": "type", "validated": true, "ani": 83.9819, "matched_fragments": 920, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas eucrenophila", "strain": "strain=CECT 4224", "accession": "GCA_000819865.1", "taxid": 649, "species_taxid": 649, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas australiensis", "strain": "strain=CECT 8023", "accession": "GCA_000819725.1", "taxid": 1114880, "species_taxid": 1114880, "relation_to_type": "type", "validated": true, "ani": 82.5961, "matched_fragments": 800, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas capeferrum", "strain": "strain=WCS358", "accession": "GCA_022548835.1", "taxid": 1495066, "species_taxid": 1495066, "relation_to_type": "type", "validated": true, "ani": 76.2967, "matched_fragments": 82, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella insulae", "strain": "strain=JBTF-M18", "accession": "GCA_009831655.1", "taxid": 2681496, "species_taxid": 2681496, "relation_to_type": "type", "validated": true, "ani": 76.2215, "matched_fragments": 83, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { 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