{ "type": "genome", "identifier": "GCF_000393955.1", "organism": "Enterococcus asini ATCC 700915", "title": "Enterococcus asini ATCC 700915", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Broad Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000393955.1", "bioproject": "PRJNA224116", "biosample": "SAMN00809115", "wgs_master": "AJAP00000000.1", "refseq_category": "na", "taxid": "1158606", "species_taxid": "57732", "organism_name": "Enterococcus asini ATCC 700915", "infraspecific_name": "strain=ATCC 700915", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/05/15", "asm_name": "Ente_asin_ATCC700915_V1", "asm_submitter": "Broad Institute", "gbrs_paired_asm": "GCA_000393955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/393/955/GCF_000393955.1_Ente_asin_ATCC700915_V1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2598724", "genome_size_ungapped": "2558756", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "11", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000393955.1-RS_2024_08_22", "annotation_date": "2024-08-22", "total_gene_count": "2482", "protein_coding_gene_count": "2403", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-05-15", "dateModified": "2013-05-15", "datePublished": "2013-05-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus asini ATCC 700915" ], "sample_taxid": [ "1158606" ], "sample_host_organism": [ "unknown" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "unknown" ], "sample_host_location_id": [], "data_size": "0.726 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2598724", "Number of Sequences": "11", "Longest Sequences (bp)": "1187828", "N50 (bp)": "1100538", "Gap Ratio (%)": "1.537986", "GCcontent (%)": "44.7", "Number of CDSs": "2434", "Average Protein Length": "308.0", "Coding Ratio (%)": "86.5", "Number of rRNAs": "7", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus asini", "strain": "strain=ATCC 700915", "accession": "GCA_000393955.1", "taxid": 57732, "species_taxid": 57732, "relation_to_type": "type", "validated": true, "ani": 99.9956, "matched_fragments": 845, "total_fragments": 862, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus asini", "strain": "strain=ATCC 700915", "accession": "GCA_000407365.1", "taxid": 57732, "species_taxid": 57732, "relation_to_type": "type", "validated": true, "ani": 99.9465, "matched_fragments": 845, "total_fragments": 862, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus asini", "strain": "strain=DSM 11492", "accession": "GCA_001885725.1", "taxid": 57732, "species_taxid": 57732, "relation_to_type": "type", "validated": true, "ani": 99.941, "matched_fragments": 801, "total_fragments": 862, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus italicus", "strain": "strain=DSM 15952", "accession": "GCA_000185365.1", "taxid": 246144, "species_taxid": 246144, "relation_to_type": "type", "validated": true, "ani": 79.195, "matched_fragments": 74, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus saigonensis", "strain": "strain=VE80", "accession": "GCA_011397115.1", "taxid": 1805431, "species_taxid": 1805431, "relation_to_type": "type", "validated": true, "ani": 78.9677, "matched_fragments": 105, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus mediterraneensis", "strain": "strain=Marseille-P4358", "accession": "GCA_900604485.1", "taxid": 2364791, "species_taxid": 2364791, "relation_to_type": "type", "validated": true, "ani": 78.7908, "matched_fragments": 115, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus italicus", "strain": "strain=DSM 15952", "accession": "GCA_001885995.1", "taxid": 246144, "species_taxid": 246144, "relation_to_type": "type", "validated": true, "ani": 78.752, "matched_fragments": 67, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus casseliflavus", "strain": "strain=NBRC 100478", "accession": "GCA_001544095.1", "taxid": 37734, "species_taxid": 37734, "relation_to_type": "type", "validated": true, "ani": 78.2654, "matched_fragments": 101, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus casseliflavus", "strain": "strain=DSM 20680", "accession": "GCA_001885845.1", "taxid": 37734, "species_taxid": 37734, "relation_to_type": "type", "validated": true, "ani": 78.2211, "matched_fragments": 100, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus faecium", "strain": "strain=NBRC 100486", "accession": "GCA_001544255.1", "taxid": 1352, "species_taxid": 1352, "relation_to_type": "type", "validated": true, "ani": 78.1517, "matched_fragments": 79, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus villorum", "strain": "strain=NBRC 100699", "accession": "GCA_007990225.1", "taxid": 112904, "species_taxid": 112904, "relation_to_type": "type", "validated": true, "ani": 78.0966, "matched_fragments": 61, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus canintestini", "strain": "strain=DSM 21207", "accession": "GCA_001885735.1", "taxid": 317010, "species_taxid": 317010, "relation_to_type": "type", "validated": true, "ani": 77.9721, "matched_fragments": 104, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000407365.1", "gtdb_species": "s__Enterococcus_C asini", "ani": 99.9465, "matched_fragments": 845, "total_fragments": 862, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.92", 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016908885.1", "gtdb_species": "s__Enterococcus_C diestrammenae", "ani": 78.9124, "matched_fragments": 260, "total_fragments": 862, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.93", "min_intra_species_ani": "97.75", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_011397115.1", "gtdb_species": "s__Enterococcus_C saigonensis", "ani": 78.8198, "matched_fragments": 103, "total_fragments": 862, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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3, "status": "-" }, { "accession": "GCF_015751045.1", "gtdb_species": "s__Enterococcus_B lactis", "ani": 78.3003, "matched_fragments": 81, "total_fragments": 862, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.26", "min_intra_species_ani": "97.66", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.81", "num_clustered_genomes": 335, "status": "-" }, { "accession": "GCF_001544095.1", "gtdb_species": "s__Enterococcus_D casseliflavus", "ani": 78.2632, "matched_fragments": 102, "total_fragments": 862, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.00", "min_intra_species_ani": "95.35", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 83, "status": "-" }, { "accession": 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