{ "type": "genome", "identifier": "GCF_000393995.1", "organism": "Enterococcus haemoperoxidus ATCC BAA-382", "title": "Enterococcus haemoperoxidus ATCC BAA-382", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Broad Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000393995.1", "bioproject": "PRJNA224116", "biosample": "SAMN00809117", "wgs_master": "AJAR00000000.1", "refseq_category": "reference genome", "taxid": "1158608", "species_taxid": "155618", "organism_name": "Enterococcus haemoperoxidus ATCC BAA-382", "infraspecific_name": "strain=ATCC BAA-382", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/05/15", "asm_name": "Ente_haem_BAA-382_V1", "asm_submitter": "Broad Institute", "gbrs_paired_asm": "GCA_000393995.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/393/995/GCF_000393995.1_Ente_haem_BAA-382_V1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3580916", "genome_size_ungapped": "3556220", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000393995.1-RS_2024_04_26", "annotation_date": "2024-04-26", "total_gene_count": "3265", "protein_coding_gene_count": "3167", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-05-15", "dateModified": "2013-05-15", "datePublished": "2013-05-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus haemoperoxidus ATCC BAA-382" ], "sample_taxid": [ "1158608" ], "sample_host_organism": [ "unknown" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "unknown" ], "sample_host_location_id": [], "data_size": "0.998 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3580916", "Number of Sequences": "3", "Longest Sequences (bp)": "2093487", "N50 (bp)": "2093487", "Gap Ratio (%)": "0.689656", "GCcontent (%)": "35.7", "Number of CDSs": "3219", "Average Protein Length": "314.7", "Coding Ratio (%)": "84.9", "Number of rRNAs": "12", "Number of tRNAs": "58", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus haemoperoxidus", "strain": "strain=ATCC BAA-382", "accession": "GCA_000393995.1", 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"total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus lactis", "strain": "strain=CCM 8412", "accession": "GCA_015751045.1", "taxid": 357441, "species_taxid": 357441, "relation_to_type": "type", "validated": true, "ani": 77.4941, "matched_fragments": 126, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus alishanensis", "strain": "strain=ALS3", "accession": "GCA_019218635.1", "taxid": 1303817, "species_taxid": 1303817, "relation_to_type": "type", "validated": true, "ani": 77.3862, "matched_fragments": 129, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus allomyrinae", "strain": "strain=BWB3-3", "accession": "GCA_017829975.1", "taxid": 2794353, "species_taxid": 2794353, "relation_to_type": "type", "validated": true, "ani": 77.291, "matched_fragments": 90, "total_fragments": 1192, "ani_threshold": 95, "status": 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1, "status": "-" }, { "accession": "GCF_000633635.1", "gtdb_species": "s__Enterococcus crotali", "ani": 84.4105, "matched_fragments": 862, "total_fragments": 1192, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "98.61", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000407145.1", "gtdb_species": "s__Enterococcus caccae", "ani": 84.3309, "matched_fragments": 872, "total_fragments": 1192, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001730315.1", 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