{
    "type": "genome",
    "identifier": "GCF_000400265.1",
    "organism": "Vibrio azureus NBRC 104587",
    "title": "Vibrio azureus NBRC 104587",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Miyazaki",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000400265.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00036655",
        "wgs_master": "BAOB00000000.1",
        "refseq_category": "na",
        "taxid": "1219077",
        "species_taxid": "512649",
        "organism_name": "Vibrio azureus NBRC 104587",
        "infraspecific_name": "strain=NBRC 104587",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/05/15",
        "asm_name": "ASM40026v1",
        "asm_submitter": "University of Miyazaki",
        "gbrs_paired_asm": "GCA_000400265.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/400/265/GCF_000400265.1_ASM40026v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4768656",
        "genome_size_ungapped": "4768626",
        "gc_percent": "42.500000",
        "replicon_count": "0",
        "scaffold_count": "783",
        "contig_count": "783",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2023-08-27",
        "total_gene_count": "4481",
        "protein_coding_gene_count": "4185",
        "non_coding_gene_count": "110",
        "pubmed_id": "23710045"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-05-15",
    "dateModified": "2013-05-15",
    "datePublished": "2013-05-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Vibrio azureus NBRC 104587"
        ],
        "sample_taxid": [
            "1219077"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.369 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4749542",
        "Number of Sequences": "675",
        "Longest Sequences (bp)": "91321",
        "N50 (bp)": "25467",
        "Gap Ratio (%)": "0.000632",
        "GCcontent (%)": "42.3",
        "Number of CDSs": "3940",
        "Average Protein Length": "316.0",
        "Coding Ratio (%)": "78.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "71",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Vibrio azureus",
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                "accession": "GCA_000400265.1",
                "taxid": 512649,
                "species_taxid": 512649,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1342,
                "total_fragments": 1358,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Vibrio azureus",
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                "species_taxid": 512649,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1358,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Vibrio azureus",
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                "status": "conclusive"
            },
            {
                "organism_name": "Vibrio sagamiensis",
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                "accession": "GCA_000400425.1",
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                "species_taxid": 512650,
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                "ani": 91.2338,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio sagamiensis",
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                "relation_to_type": "type",
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                "ani": 91.1345,
                "matched_fragments": 1051,
                "total_fragments": 1358,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio campbellii",
                "strain": "strain=CAIM 519",
                "accession": "GCA_000334195.1",
                "taxid": 680,
                "species_taxid": 680,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0324,
                "matched_fragments": 472,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio rotiferianus",
                "strain": "strain=CAIM 577",
                "accession": "GCA_002741985.1",
                "taxid": 190895,
                "species_taxid": 190895,
                "relation_to_type": "type",
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                "ani": 81.6271,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio natriegens",
                "strain": "strain=14048",
                "accession": "GCA_024508015.1",
                "taxid": 691,
                "species_taxid": 691,
                "relation_to_type": "type",
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                "ani": 80.3664,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio panuliri",
                "strain": "strain=LBS 2",
                "accession": "GCA_008830195.1",
                "taxid": 1381081,
                "species_taxid": 1381081,
                "relation_to_type": "type",
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                "ani": 79.8947,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio panuliri",
                "strain": "strain=JCM 19500",
                "accession": "GCA_009938205.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio fortis",
                "strain": "strain=LMG 21557",
                "accession": "GCA_024347475.1",
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                "species_taxid": 212667,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Vibrio celticus",
                "strain": "strain=CECT 7224",
                "accession": "GCA_024347335.1",
                "taxid": 446372,
                "species_taxid": 446372,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3428,
                "matched_fragments": 271,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_002849855.1",
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                "mean_intra_species_ani": "N/A",
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    "_bac2feature": {
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}