{ "type": "genome", "identifier": "GCF_000400955.1", "organism": "Spiroplasma syrphidicola EA-1", "title": "Spiroplasma syrphidicola EA-1", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Academia Sinica", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000400955.1", "bioproject": "PRJNA224116", "biosample": "SAMN02602969", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1276229", "species_taxid": "216945", "organism_name": "Spiroplasma syrphidicola EA-1", "infraspecific_name": "strain=EA-1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/05/22", "asm_name": "ASM40095v1", "asm_submitter": "Academia Sinica", "gbrs_paired_asm": "GCA_000400955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/400/955/GCF_000400955.1_ASM40095v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1107344", "genome_size_ungapped": "1107344", "gc_percent": "29.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000400955.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "1046", "protein_coding_gene_count": "1006", "non_coding_gene_count": "38", "pubmed_id": "23711669" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-05-22", "dateModified": "2013-05-22", "datePublished": "2013-05-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Spiroplasma syrphidicola EA-1" ], "sample_taxid": [ "1276229" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.300 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1107344", "Number of Sequences": "1", "Longest Sequences (bp)": "1107344", "N50 (bp)": "1107344", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.2", "Number of CDSs": "1779", "Average Protein Length": "135.4", "Coding Ratio (%)": "65.3", "Number of rRNAs": "3", "Number of tRNAs": "32", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spiroplasma syrphidicola", "strain": "strain=EA-1", "accession": "GCA_000400955.1", "taxid": 216945, "species_taxid": 216945, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 368, "total_fragments": 369, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Spiroplasma chrysopicola", "strain": "strain=DF-1", "accession": "GCA_000400935.1", "taxid": 216933, "species_taxid": 216933, "relation_to_type": "type", "validated": true, "ani": 91.1388, "matched_fragments": 326, "total_fragments": 369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiroplasma citri", "strain": "strain=R8-A2", "accession": "GCA_001886855.1", "taxid": 2133, "species_taxid": 2133, "relation_to_type": "type", "validated": true, "ani": 78.6907, "matched_fragments": 166, "total_fragments": 369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiroplasma phoeniceum", "strain": "strain=P40", "accession": "GCA_003339775.1", "taxid": 47835, "species_taxid": 47835, "relation_to_type": "type", "validated": true, "ani": 78.6347, "matched_fragments": 162, "total_fragments": 369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiroplasma mirum", "strain": "strain=ATCC 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"spiral_cell_shape": 0.857 }, "_genome_taxon": [ "Spiroplasma", "syrphidicola", "EA-1" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }