{ "type": "genome", "identifier": "GCF_000406945.1", "organism": "Enterococcus dispar ATCC 51266", "title": "Enterococcus dispar ATCC 51266", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Broad Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000406945.1", "bioproject": "PRJNA224116", "biosample": "SAMN02596962", "wgs_master": "AHYR00000000.1", "refseq_category": "reference genome", "taxid": "1139219", "species_taxid": "44009", "organism_name": "Enterococcus dispar ATCC 51266", "infraspecific_name": "strain=ATCC 51266", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/06/04", "asm_name": "Ente_disp_ATCC51266_V1", "asm_submitter": "Broad Institute", "gbrs_paired_asm": "GCA_000406945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/406/945/GCF_000406945.1_Ente_disp_ATCC51266_V1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2822228", "genome_size_ungapped": "2804237", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000406945.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2716", "protein_coding_gene_count": "2607", "non_coding_gene_count": "84", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-06-04", "dateModified": "2013-06-04", "datePublished": "2013-06-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus dispar ATCC 51266" ], "sample_taxid": [ "1139219" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.790 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2822228", "Number of Sequences": "3", "Longest Sequences (bp)": "2813550", "N50 (bp)": "2813550", "Gap Ratio (%)": "0.637475", "GCcontent (%)": "37.2", "Number of CDSs": "2656", "Average Protein Length": "301.5", "Coding Ratio (%)": "85.1", "Number of rRNAs": "17", "Number of tRNAs": "63", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus dispar", "strain": "strain=ATCC 51266", "accession": "GCA_000406945.1", "taxid": 44009, "species_taxid": 44009, "relation_to_type": "type", "validated": true, "ani": 99.9966, "matched_fragments": 935, "total_fragments": 939, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus dispar", "strain": "strain=ATCC 51266", "accession": "GCA_000407585.1", "taxid": 44009, "species_taxid": 44009, "relation_to_type": "type", "validated": true, "ani": 99.9857, "matched_fragments": 934, "total_fragments": 939, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus dispar", "strain": "strain=DSM 6630", "accession": "GCA_001886105.1", "taxid": 44009, "species_taxid": 44009, "relation_to_type": "type", "validated": true, "ani": 99.958, "matched_fragments": 884, "total_fragments": 939, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus canintestini", "strain": "strain=DSM 21207", "accession": "GCA_001885735.1", "taxid": 317010, "species_taxid": 317010, "relation_to_type": "type", "validated": true, "ani": 86.3014, "matched_fragments": 679, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus saigonensis", "strain": "strain=VE80", "accession": "GCA_011397115.1", "taxid": 1805431, "species_taxid": 1805431, "relation_to_type": "type", "validated": true, "ani": 83.1598, "matched_fragments": 623, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus mediterraneensis", "strain": "strain=Marseille-P4358", "accession": "GCA_900604485.1", "taxid": 2364791, "species_taxid": 2364791, "relation_to_type": "type", "validated": true, "ani": 80.1536, "matched_fragments": 147, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000271405.2", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 78.6022, "matched_fragments": 121, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus lactis", "strain": "strain=CCM 8412", "accession": "GCA_015751045.1", "taxid": 357441, "species_taxid": 357441, "relation_to_type": "type", "validated": true, "ani": 78.364, "matched_fragments": 107, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000406945.1", "gtdb_species": "s__Enterococcus_C dispar", "ani": 99.9966, "matched_fragments": 935, "total_fragments": 939, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.61", "min_intra_species_ani": "99.21", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_001885735.1", "gtdb_species": "s__Enterococcus_C canintestini", "ani": 86.2826, "matched_fragments": 680, "total_fragments": 939, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.44", "min_intra_species_ani": "98.44", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017316025.1", "gtdb_species": "s__Enterococcus_C sp017316025", "ani": 83.603, "matched_fragments": 654, "total_fragments": 939, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011397115.1", "gtdb_species": "s__Enterococcus_C saigonensis", "ani": 83.1423, "matched_fragments": 623, "total_fragments": 939, "gtdb_taxonomy": 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0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Enterococcus", "dispar", "ATCC", "51266" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }