{ "type": "genome", "identifier": "GCF_000407005.1", "organism": "Enterococcus saccharolyticus subsp. saccharolyticus ATCC 43076", "title": "Enterococcus saccharolyticus subsp. saccharolyticus ATCC 43076", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Broad Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000407005.1", "bioproject": "PRJNA224116", "biosample": "SAMN02596896", "wgs_master": "AHYT00000000.1", "refseq_category": "na", "taxid": "1139996", "species_taxid": "41997", "organism_name": "Enterococcus saccharolyticus subsp. saccharolyticus ATCC 43076", "infraspecific_name": "strain=ATCC 43076", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/06/04", "asm_name": "Ente_sacc_ATCC43076_V1", "asm_submitter": "Broad Institute", "gbrs_paired_asm": "GCA_000407005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/407/005/GCF_000407005.1_Ente_sacc_ATCC43076_V1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2638500", "genome_size_ungapped": "2622550", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000407005.1-RS_2024_05_15", "annotation_date": "2024-05-15", "total_gene_count": "2663", "protein_coding_gene_count": "2508", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-06-04", "dateModified": "2013-06-04", "datePublished": "2013-06-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus saccharolyticus subsp. saccharolyticus ATCC 43076" ], "sample_taxid": [ "1139996" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.736 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2638500", "Number of Sequences": "4", "Longest Sequences (bp)": "2034212", "N50 (bp)": "2034212", "Gap Ratio (%)": "0.604510", "GCcontent (%)": "37.0", "Number of CDSs": "2630", "Average Protein Length": "292.8", "Coding Ratio (%)": "87.6", "Number of rRNAs": "16", "Number of tRNAs": "62", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus saccharolyticus subsp. saccharolyticus", "strain": "strain=ATCC 43076", "accession": "GCA_000407005.1", 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