{ "type": "genome", "identifier": "GCF_000407025.1", "organism": "Enterococcus sulfureus ATCC 49903", "title": "Enterococcus sulfureus ATCC 49903", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Broad Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000407025.1", "bioproject": "PRJNA224116", "biosample": "SAMN02596964", "wgs_master": "AHYX00000000.1", "refseq_category": "na", "taxid": "1140003", "species_taxid": "1356", "organism_name": "Enterococcus sulfureus ATCC 49903", "infraspecific_name": "strain=ATCC 49903", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/06/04", "asm_name": "Ente_sulf_ATCC49903_V1", "asm_submitter": "Broad Institute", "gbrs_paired_asm": "GCA_000407025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/407/025/GCF_000407025.1_Ente_sulf_ATCC49903_V1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2306463", "genome_size_ungapped": "2295734", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000407025.1-RS_2024_05_15", "annotation_date": "2024-05-15", "total_gene_count": "2263", "protein_coding_gene_count": "2174", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-06-04", "dateModified": "2013-06-04", "datePublished": "2013-06-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus sulfureus ATCC 49903" ], "sample_taxid": [ "1140003" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.647 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2306463", "Number of Sequences": "9", "Longest Sequences (bp)": "797597", "N50 (bp)": "732941", "Gap Ratio (%)": "0.465171", "GCcontent (%)": "37.9", "Number of CDSs": "2187", "Average Protein Length": "311.3", "Coding Ratio (%)": "88.5", "Number of rRNAs": "13", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus sulfureus", "strain": "strain=ATCC 49903", "accession": "GCA_000407025.1", "taxid": 1356, "species_taxid": 1356, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 762, "total_fragments": 764, 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"strain": "strain=ATCC 43076", "accession": "GCA_000407285.1", "taxid": 1814218, "species_taxid": 41997, "relation_to_type": "type", "validated": true, "ani": 78.4624, "matched_fragments": 177, "total_fragments": 764, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus italicus", "strain": "strain=DSM 15952", "accession": "GCA_001885995.1", "taxid": 246144, "species_taxid": 246144, "relation_to_type": "type", "validated": true, "ani": 78.4335, "matched_fragments": 145, "total_fragments": 764, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus casseliflavus", "strain": "strain=DSM 20680", "accession": "GCA_001885845.1", "taxid": 37734, "species_taxid": 37734, "relation_to_type": "type", "validated": true, "ani": 78.4132, "matched_fragments": 105, "total_fragments": 764, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus saccharolyticus", "strain": "strain=DSM 20726", "accession": "GCA_001886235.1", "taxid": 41997, "species_taxid": 41997, "relation_to_type": "type", "validated": true, "ani": 78.3336, "matched_fragments": 179, "total_fragments": 764, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus alcedinis", "strain": "strain=CCM 8433", "accession": "GCA_014635985.1", "taxid": 1274384, "species_taxid": 1274384, "relation_to_type": "type", "validated": true, "ani": 77.9114, "matched_fragments": 111, "total_fragments": 764, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus faecalis", "strain": "strain=NBRC 100480", "accession": "GCA_001544235.1", "taxid": 1351, "species_taxid": 1351, "relation_to_type": "type", "validated": true, "ani": 77.6525, "matched_fragments": 107, "total_fragments": 764, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus ratti", "strain": "strain=DSM 15687", "accession": "GCA_001886195.1", "taxid": 150033, "species_taxid": 150033, "relation_to_type": "type", "validated": true, "ani": 77.6148, "matched_fragments": 90, "total_fragments": 764, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus ureilyticus", "strain": "strain=CCUG 48799", "accession": "GCA_002806915.1", "taxid": 1131292, "species_taxid": 1131292, "relation_to_type": "type", "validated": true, "ani": 77.1229, "matched_fragments": 103, "total_fragments": 764, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000407605.1", "gtdb_species": "s__Enterococcus_G sulfureus", "ani": 99.9882, "matched_fragments": 756, "total_fragments": 764, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", 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