{ "type": "genome", "identifier": "GCF_000407425.1", "organism": "Enterococcus hirae ATCC 9790", "title": "Enterococcus hirae ATCC 9790", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Broad Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000407425.1", "bioproject": "PRJNA224116", "biosample": "SAMN02596951", "wgs_master": "ASVZ00000000.1", "refseq_category": "na", "taxid": "768486", "species_taxid": "1354", "organism_name": "Enterococcus hirae ATCC 9790", "infraspecific_name": "strain=ATCC 9790", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/05/31", "asm_name": "Ente_hira_ATCC8043_V2", "asm_submitter": "Broad Institute", "gbrs_paired_asm": "GCA_000407425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/407/425/GCF_000407425.1_Ente_hira_ATCC8043_V2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2882665", "genome_size_ungapped": "2882665", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000407425.1-RS_2024_05_15", "annotation_date": "2024-05-15", "total_gene_count": "2750", "protein_coding_gene_count": "2610", "non_coding_gene_count": "85", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-05-31", "dateModified": "2013-05-31", "datePublished": "2013-05-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus hirae ATCC 9790" ], "sample_taxid": [ "768486" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.811 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2882665", "Number of Sequences": "6", "Longest Sequences (bp)": "1432692", "N50 (bp)": "676112", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.8", "Number of CDSs": "2697", "Average Protein Length": "298.9", "Coding Ratio (%)": "83.9", "Number of rRNAs": "8", "Number of tRNAs": "71", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000407425.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 958, "total_fragments": 958, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus hirae", "strain": "strain=FDAARGOS_1123", "accession": "GCA_016766815.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 99.9978, "matched_fragments": 957, "total_fragments": 958, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000271405.2", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 99.9781, "matched_fragments": 941, "total_fragments": 958, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000393835.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 99.9772, "matched_fragments": 950, "total_fragments": 958, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus hirae", "strain": "strain=DSM 20160", 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Enterococcus", "hirae", "ATCC", "9790" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }