{
    "type": "genome",
    "identifier": "GCF_000409305.1",
    "organism": "Cronobacter malonaticus LMG 23826",
    "title": "Cronobacter malonaticus LMG 23826",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Cronobacter Genus Genome Sequencing Consortium",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000409305.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02952929",
        "wgs_master": "AJKV00000000.1",
        "refseq_category": "na",
        "taxid": "1159491",
        "species_taxid": "413503",
        "organism_name": "Cronobacter malonaticus LMG 23826",
        "infraspecific_name": "strain=LMG 23826",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/06/07",
        "asm_name": "Cmal825 final contigs",
        "asm_submitter": "Cronobacter Genus Genome Sequencing Consortium",
        "gbrs_paired_asm": "GCA_000409305.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/409/305/GCF_000409305.1_Cmal825_final_contigs",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4434037",
        "genome_size_ungapped": "4434037",
        "gc_percent": "57.000000",
        "replicon_count": "0",
        "scaffold_count": "127",
        "contig_count": "127",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000409305.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "4339",
        "protein_coding_gene_count": "4117",
        "non_coding_gene_count": "83",
        "pubmed_id": "23724777"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-06-07",
    "dateModified": "2013-06-07",
    "datePublished": "2013-06-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cronobacter malonaticus LMG 23826"
        ],
        "sample_taxid": [
            "1159491"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.253 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 97.92,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4434037",
        "Number of Sequences": "127",
        "Longest Sequences (bp)": "235818",
        "N50 (bp)": "108289",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "56.8",
        "Number of CDSs": "4120",
        "Average Protein Length": "307.3",
        "Coding Ratio (%)": "85.7",
        "Number of rRNAs": "4",
        "Number of tRNAs": "70",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Cronobacter malonaticus",
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                "accession": "GCA_000409305.1",
                "taxid": 413503,
                "species_taxid": 413503,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1416,
                "total_fragments": 1419,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Cronobacter malonaticus",
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                "accession": "GCA_001277215.2",
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                "species_taxid": 413503,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9919,
                "matched_fragments": 1415,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
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                "species_taxid": 28141,
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                "ani": 94.8861,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cronobacter sakazakii",
                "strain": "strain=ATCC 29544",
                "accession": "GCA_001971035.1",
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                "species_taxid": 28141,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.857,
                "matched_fragments": 1200,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cronobacter sakazakii",
                "strain": "strain=ATCC 29544",
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                "relation_to_type": "type",
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                "ani": 94.8527,
                "matched_fragments": 1307,
                "total_fragments": 1419,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cronobacter universalis",
                "strain": "strain=NCTC 9529",
                "accession": "GCA_001277175.1",
                "taxid": 535744,
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                "relation_to_type": "type",
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                "ani": 94.2526,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cronobacter universalis",
                "strain": "strain=NCTC 9529",
                "accession": "GCA_000409325.1",
                "taxid": 535744,
                "species_taxid": 535744,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.2483,
                "matched_fragments": 1262,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cronobacter universalis",
                "strain": "strain=NCTC 9529",
                "accession": "GCA_900447325.1",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cronobacter universalis",
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                "accession": "GCA_000319325.1",
                "taxid": 535744,
                "species_taxid": 535744,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.9707,
                "matched_fragments": 1276,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter hormaechei",
                "strain": "strain=FDAARGOS 1433",
                "accession": "GCA_019048245.1",
                "taxid": 158836,
                "species_taxid": 158836,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 81.2755,
                "matched_fragments": 833,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter roggenkampii",
                "strain": "strain=DSM 16690",
                "accession": "GCA_024390995.1",
                "taxid": 1812935,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2313,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter wuhouensis",
                "strain": "strain=WCHEW120002",
                "accession": "GCA_004331265.1",
                "taxid": 2529381,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1297,
                "matched_fragments": 809,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Citrobacter rodentium",
                "strain": "strain=DSM 16636",
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                "taxid": 67825,
                "species_taxid": 67825,
                "relation_to_type": "type",
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                "matched_fragments": 769,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_001277215.2",
                "gtdb_species": "s__Cronobacter malonaticus",
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                "total_fragments": 1419,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter",
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            },
            {
                "accession": "GCF_001277175.1",
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter",
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            },
            {
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                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 9,
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
        "Cronobacter",
        "malonaticus",
        "LMG",
        "23826"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}