{ "type": "genome", "identifier": "GCF_000409325.1", "organism": "Cronobacter universalis NCTC 9529", "title": "Cronobacter universalis NCTC 9529", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Cronobacter Genus Genome Sequencing Consortium", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000409325.1", "bioproject": "PRJNA224116", "biosample": "SAMN02952930", "wgs_master": "AJKW00000000.1", "refseq_category": "na", "taxid": "1074000", "species_taxid": "535744", "organism_name": "Cronobacter universalis NCTC 9529", "infraspecific_name": "strain=NCTC 9529", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/06/07", "asm_name": "Cuni9529 final contigs", "asm_submitter": "Cronobacter Genus Genome Sequencing Consortium", "gbrs_paired_asm": "GCA_000409325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/409/325/GCF_000409325.1_Cuni9529_final_contigs", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4334001", "genome_size_ungapped": "4334001", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "35", "contig_count": "35", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000409325.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "4140", "protein_coding_gene_count": "3994", "non_coding_gene_count": "84", "pubmed_id": "23724777" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-06-07", "dateModified": "2013-06-07", "datePublished": "2013-06-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Cronobacter universalis NCTC 9529" ], "sample_taxid": [ "1074000" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: London" ], "sample_host_location_id": [], "data_size": "1.217 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4334001", "Number of Sequences": "35", "Longest Sequences (bp)": "701748", "N50 (bp)": "297135", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.8", "Number of CDSs": "4040", "Average Protein Length": "313.8", "Coding Ratio (%)": "87.8", "Number of rRNAs": "4", "Number of tRNAs": "74", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cronobacter universalis", "strain": "strain=NCTC 9529", "accession": "GCA_000409325.1", "taxid": 535744, "species_taxid": 535744, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1429, "total_fragments": 1431, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cronobacter universalis", "strain": "strain=NCTC 9529", "accession": "GCA_001277175.1", "taxid": 535744, "species_taxid": 535744, "relation_to_type": "type", "validated": true, "ani": 99.9969, "matched_fragments": 1430, "total_fragments": 1431, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cronobacter universalis", "strain": "strain=NCTC 9529", "accession": "GCA_900447325.1", "taxid": 535744, "species_taxid": 535744, "relation_to_type": "type", "validated": true, "ani": 99.9962, "matched_fragments": 1431, "total_fragments": 1431, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cronobacter universalis", "strain": "strain=NCTC 9529", "accession": "GCA_000319325.1", "taxid": 535744, "species_taxid": 535744, "relation_to_type": "type", "validated": true, "ani": 99.6312, "matched_fragments": 1419, "total_fragments": 1431, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cronobacter malonaticus", "strain": "strain=LMG 23826", "accession": "GCA_001277215.2", "taxid": 413503, "species_taxid": 413503, "relation_to_type": "type", "validated": true, "ani": 94.2503, "matched_fragments": 1309, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter malonaticus", "strain": "strain=LMG 23826", "accession": "GCA_000409305.1", "taxid": 413503, "species_taxid": 413503, "relation_to_type": "type", "validated": true, "ani": 94.2484, "matched_fragments": 1258, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=FDAARGOS_927", "accession": "GCA_016103025.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 93.6496, "matched_fragments": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 81.134, "matched_fragments": 838, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 80.8939, "matched_fragments": 807, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001277175.1", "gtdb_species": "s__Cronobacter universalis", "ani": 99.9969, "matched_fragments": 1430, "total_fragments": 1431, "gtdb_taxonomy": 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