{ "type": "genome", "identifier": "GCF_000410875.1", "organism": "Halopseudomonas pelagia CL-AP6", "title": "Halopseudomonas pelagia CL-AP6", "description": "na", "data type": "Genome sequencing and assembly", "organization": "KOPRI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000410875.1", "bioproject": "PRJNA224116", "biosample": "SAMN02470162", "wgs_master": "AROI00000000.1", "refseq_category": "reference genome", "taxid": "1323663", "species_taxid": "553151", "organism_name": "Halopseudomonas pelagia CL-AP6", "infraspecific_name": "strain=CL-AP6", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/06/13", "asm_name": "KCCM90073", "asm_submitter": "KOPRI", "gbrs_paired_asm": "GCA_000410875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/410/875/GCF_000410875.1_KCCM90073", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4642307", "genome_size_ungapped": "4642307", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "81", "contig_count": "81", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000410875.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "4268", "protein_coding_gene_count": "4114", "non_coding_gene_count": "54", "pubmed_id": "24009125" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-06-13", "dateModified": "2013-06-13", "datePublished": "2013-06-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Halopseudomonas pelagia CL-AP6" ], "sample_taxid": [ "1323663" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.321 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4642307", "Number of Sequences": "81", "Longest Sequences (bp)": "492049", "N50 (bp)": "186161", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.4", "Number of CDSs": "4225", "Average Protein Length": "326.1", "Coding Ratio (%)": "89.0", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halopseudomonas salina", "strain": "strain=XCD-X85", "accession": "GCA_008641105.1", "taxid": 1323744, "species_taxid": 1323744, "relation_to_type": "type", "validated": true, "ani": 79.6314, "matched_fragments": 510, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas salina", "strain": "strain=CGMCC 1.12482", "accession": "GCA_014637955.1", "taxid": 1323744, "species_taxid": 1323744, "relation_to_type": "type", "validated": true, "ani": 79.5426, "matched_fragments": 517, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas litoralis", "strain": "strain=2SM5", "accession": "GCA_900105005.1", "taxid": 797277, "species_taxid": 797277, "relation_to_type": "type", "validated": true, "ani": 79.3878, "matched_fragments": 401, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas profundi", "strain": "strain=M5", "accession": "GCA_008638305.1", "taxid": 1981513, "species_taxid": 1981513, "relation_to_type": "type", "validated": true, "ani": 78.7489, "matched_fragments": 391, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas bauzanensis", "strain": "strain=DSM 22558", "accession": "GCA_900111225.1", "taxid": 653930, "species_taxid": 653930, "relation_to_type": "type", "validated": true, "ani": 78.6429, "matched_fragments": 390, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas saliphila", "strain": "strain=16W4-4-3", "accession": "GCA_008638345.1", "taxid": 2586906, "species_taxid": 2586906, "relation_to_type": "type", "validated": true, "ani": 78.6097, "matched_fragments": 415, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas bauzanensis", "strain": "strain=CGMCC 1.9095", "accession": "GCA_900114735.1", "taxid": 653930, "species_taxid": 653930, "relation_to_type": "type", "validated": true, "ani": 78.5782, "matched_fragments": 393, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas oceani", "strain": "strain=DSM 100277", "accession": "GCA_002903165.1", "taxid": 1708783, "species_taxid": 1708783, "relation_to_type": "type", "validated": true, "ani": 78.5698, "matched_fragments": 389, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas pachastrellae", "strain": "strain=CCUG 46540", "accession": "GCA_001989375.1", "taxid": 254161, "species_taxid": 254161, "relation_to_type": "type", "validated": true, "ani": 78.5027, "matched_fragments": 438, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas pachastrellae", "strain": "strain=JCM 12285", "accession": "GCA_900114765.1", "taxid": 254161, "species_taxid": 254161, "relation_to_type": "type", "validated": true, "ani": 78.4748, "matched_fragments": 440, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas aestusnigri", "strain": "strain=VGXO14", 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