{
    "type": "genome",
    "identifier": "GCF_000411375.1",
    "organism": "Corynebacterium pyruviciproducens ATCC BAA-1742",
    "title": "Corynebacterium pyruviciproducens ATCC BAA-1742",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Broad Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000411375.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02596973",
        "wgs_master": "ATBY00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1125779",
        "species_taxid": "598660",
        "organism_name": "Corynebacterium pyruviciproducens ATCC BAA-1742",
        "infraspecific_name": "strain=ATCC BAA-1742",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/06/14",
        "asm_name": "Cory_pyru_17730_V1",
        "asm_submitter": "Broad Institute",
        "gbrs_paired_asm": "GCA_000411375.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/411/375/GCF_000411375.1_Cory_pyru_17730_V1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2722973",
        "genome_size_ungapped": "2703797",
        "gc_percent": "61.000000",
        "replicon_count": "0",
        "scaffold_count": "3",
        "contig_count": "18",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000411375.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "2464",
        "protein_coding_gene_count": "2359",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-06-14",
    "dateModified": "2013-06-14",
    "datePublished": "2013-06-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corynebacterium pyruviciproducens ATCC BAA-1742"
        ],
        "sample_taxid": [
            "1125779"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.763 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2722973",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "1463493",
        "N50 (bp)": "1463493",
        "Gap Ratio (%)": "0.704230",
        "GCcontent (%)": "61.2",
        "Number of CDSs": "2446",
        "Average Protein Length": "317.1",
        "Coding Ratio (%)": "85.4",
        "Number of rRNAs": "10",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Corynebacterium pyruviciproducens",
                "strain": "strain=ATCC BAA-1742",
                "accession": "GCA_000411375.1",
                "taxid": 598660,
                "species_taxid": 598660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9987,
                "matched_fragments": 901,
                "total_fragments": 906,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium glucuronolyticum",
                "strain": "strain=FDAARGOS_1053",
                "accession": "GCA_016127395.1",
                "taxid": 39791,
                "species_taxid": 39791,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.722,
                "matched_fragments": 550,
                "total_fragments": 906,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium glucuronolyticum",
                "strain": "strain=DSM 44120",
                "accession": "GCA_900176155.1",
                "taxid": 39791,
                "species_taxid": 39791,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4239,
                "matched_fragments": 540,
                "total_fragments": 906,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium glucuronolyticum",
                "strain": "strain=DSM 44120",
                "accession": "GCA_019633635.1",
                "taxid": 39791,
                "species_taxid": 39791,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4237,
                "matched_fragments": 541,
                "total_fragments": 906,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium jeikeium",
                "strain": "strain=NCTC11913",
                "accession": "GCA_900461185.1",
                "taxid": 38289,
                "species_taxid": 38289,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.4278,
                "matched_fragments": 124,
                "total_fragments": 906,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium vitaeruminis",
                "strain": "strain=DSM 20294",
                "accession": "GCA_000550805.1",
                "taxid": 38305,
                "species_taxid": 38305,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4088,
                "matched_fragments": 219,
                "total_fragments": 906,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium jeikeium",
                "strain": "strain=ATCC 43734",
                "accession": "GCA_000163435.1",
                "taxid": 38289,
                "species_taxid": 38289,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.1148,
                "matched_fragments": 125,
                "total_fragments": 906,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium doosanense",
                "strain": "strain=CAU 212",
                "accession": "GCA_000767055.1",
                "taxid": 1121358,
                "species_taxid": 1121358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0529,
                "matched_fragments": 191,
                "total_fragments": 906,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium jeikeium",
                "strain": "strain=ATCC 43734",
                "accession": "GCA_001999385.1",
                "taxid": 38289,
                "species_taxid": 38289,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.0295,
                "matched_fragments": 118,
                "total_fragments": 906,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium humireducens",
                "strain": "strain=NBRC 106098",
                "accession": "GCA_001571025.1",
                "taxid": 1223514,
                "species_taxid": 1223514,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.877,
                "matched_fragments": 198,
                "total_fragments": 906,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces gougerotii",
                "strain": "strain=JCM 4136",
                "accession": "GCA_014648955.1",
                "taxid": 53448,
                "species_taxid": 53448,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 75.5729,
                "matched_fragments": 73,
                "total_fragments": 906,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000411375.1",
                "gtdb_species": "s__Corynebacterium pyruviciproducens",
                "ani": 99.9987,
                "matched_fragments": 901,
                "total_fragments": 906,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.67",
                "min_intra_species_ani": "97.67",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900176155.1",
                "gtdb_species": "s__Corynebacterium glucuronolyticum",
                "ani": 82.4239,
                "matched_fragments": 540,
                "total_fragments": 906,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "98.66",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_000550805.1",
                "gtdb_species": "s__Corynebacterium vitaeruminis",
                "ani": 78.4459,
                "matched_fragments": 220,
                "total_fragments": 906,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.60",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000819445.1",
                "gtdb_species": "s__Corynebacterium humireducens",
                "ani": 78.2289,
                "matched_fragments": 206,
                "total_fragments": 906,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.80",
                "min_intra_species_ani": "97.60",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001941485.1",
                "gtdb_species": "s__Corynebacterium frankenforstense",
                "ani": 78.168,
                "matched_fragments": 204,
                "total_fragments": 906,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000163435.1",
                "gtdb_species": "s__Corynebacterium jeikeium",
                "ani": 78.1131,
                "matched_fragments": 125,
                "total_fragments": 906,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.68",
                "min_intra_species_ani": "96.00",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_000767055.1",
                "gtdb_species": "s__Corynebacterium doosanense",
                "ani": 78.1055,
                "matched_fragments": 193,
                "total_fragments": 906,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001941445.1",
                "gtdb_species": "s__Corynebacterium aquilae",
                "ani": 78.0589,
                "matched_fragments": 132,
                "total_fragments": 906,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016728705.1",
                "gtdb_species": "s__Corynebacterium sp001807205",
                "ani": 77.7968,
                "matched_fragments": 145,
                "total_fragments": 906,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.15",
                "min_intra_species_ani": "96.83",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_001807485.1",
                "gtdb_species": "s__Corynebacterium sp001807485",
                "ani": 77.7885,
                "matched_fragments": 126,
                "total_fragments": 906,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.83",
                "min_intra_species_ani": "97.75",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002994655.1",
                "gtdb_species": "s__Corynebacterium sp002994655",
                "ani": 77.756,
                "matched_fragments": 163,
                "total_fragments": 906,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_903645305.1",
                "gtdb_species": "s__Corynebacterium sp001764565",
                "ani": 77.6449,
                "matched_fragments": 167,
                "total_fragments": 906,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.10",
                "min_intra_species_ani": "98.10",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_011170125.1",
                "gtdb_species": "s__Streptomyces diastaticus",
                "ani": 76.3047,
                "matched_fragments": 77,
                "total_fragments": 906,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.51",
                "min_intra_species_ani": "98.72",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_014648195.1",
                "gtdb_species": "s__Streptomyces purpureus",
                "ani": 75.7449,
                "matched_fragments": 75,
                "total_fragments": 906,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.54",
                "min_intra_species_ani": "99.54",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001426585.1",
                "gtdb_species": "s__Streptomyces sp001426585",
                "ani": 75.6558,
                "matched_fragments": 77,
                "total_fragments": 906,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.07",
                "min_intra_species_ani": "96.69",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.275,
        "cell_length": 0.068,
        "doubling_h": -0.089,
        "growth_tmp": 35.111,
        "optimum_tmp": 35.173,
        "optimum_ph": 7.292,
        "genome_size": 2639223.511,
        "gc_content": 59.791,
        "coding_genes": 2390.094,
        "rRNA16S_genes": 4.282,
        "tRNA_genes": 52.979,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.75,
        "facultative_respiration": 0.231,
        "anaerobic_respiration": 0.063,
        "aerobic_respiration": 0.705,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.985,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.014,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Corynebacterium",
        "pyruviciproducens",
        "ATCC",
        "BAA-1742"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}