{ "type": "genome", "identifier": "GCF_000412185.1", "organism": "Euryhalocaulis caribicus", "title": "Euryhalocaulis caribicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xiamen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000412185.1", "bioproject": "PRJNA224116", "biosample": "SAMN02053529", "wgs_master": "ASJA00000000.1", "refseq_category": "reference genome", "taxid": "1161401", "species_taxid": "1161401", "organism_name": "Euryhalocaulis caribicus", "infraspecific_name": "strain=JL2009", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/06/18", "asm_name": "jl2009", "asm_submitter": "Xiamen University", "gbrs_paired_asm": "GCA_000412185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/412/185/GCF_000412185.1_jl2009", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3323095", "genome_size_ungapped": "3323095", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000412185.1-RS_2024_04_04", "annotation_date": "2024-04-04", "total_gene_count": "3296", "protein_coding_gene_count": "3228", "non_coding_gene_count": "51", "pubmed_id": "23929464" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-06-18", "dateModified": "2013-06-18", "datePublished": "2013-06-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Euryhalocaulis caribicus" ], "sample_taxid": [ "1161401" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.920 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3323095", "Number of Sequences": "39", "Longest Sequences (bp)": "370916", "N50 (bp)": "155932", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.9", "Number of CDSs": "3232", "Average Protein Length": "312.9", "Coding Ratio (%)": "91.3", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Euryhalocaulis caribicus", "strain": "strain=JL2009", "accession": "GCA_000412185.1", "taxid": 1161401, "species_taxid": 1161401, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1085, "total_fragments": 1089, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinicauda salina", "strain": "strain=WD6-1", "accession": "GCA_003122085.1", "taxid": 2135793, "species_taxid": 2135793, "relation_to_type": "type", "validated": true, "ani": 77.3218, "matched_fragments": 218, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda algicola", "strain": "strain=JCM 31718", "accession": "GCA_004793685.1", "taxid": 2029849, "species_taxid": 2029849, "relation_to_type": "type", "validated": true, "ani": 77.2474, "matched_fragments": 225, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda algicola", "strain": "strain=RMAR8-3", "accession": "GCA_017161425.1", "taxid": 2029849, "species_taxid": 2029849, "relation_to_type": "type", "validated": true, "ani": 77.2318, "matched_fragments": 229, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquisalinus 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