{ "type": "genome", "identifier": "GCF_000412675.1", "organism": "Pseudomonas putida NBRC 14164", "title": "Pseudomonas putida NBRC 14164", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000412675.1", "bioproject": "PRJNA224116", "biosample": "SAMD00061028", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1211579", "species_taxid": "303", "organism_name": "Pseudomonas putida NBRC 14164", "infraspecific_name": "strain=NBRC 14164", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/06/14", "asm_name": "ASM41267v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000412675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/412/675/GCF_000412675.1_ASM41267v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6156701", "genome_size_ungapped": "6156701", "gc_percent": "62.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000412675.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "5573", "protein_coding_gene_count": "5376", "non_coding_gene_count": "101", "pubmed_id": "24526630" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-06-14", "dateModified": "2013-06-14", "datePublished": "2013-06-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas putida NBRC 14164" ], "sample_taxid": [ "1211579" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.705 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6156701", "Number of Sequences": "1", "Longest Sequences (bp)": "6156701", "N50 (bp)": "6156701", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.3", "Number of CDSs": "5446", "Average Protein Length": "334.6", "Coding Ratio (%)": "88.8", "Number of rRNAs": "22", "Number of tRNAs": "80", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas putida", "strain": "strain=NBRC 14164", "accession": "GCA_000412675.1", "taxid": 303, "species_taxid": 303, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 2051, "total_fragments": 2052, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas putida", "strain": "strain=ATCC 12633", "accession": "GCA_024508115.1", "taxid": 303, "species_taxid": 303, "relation_to_type": "suspected-type", "validated": true, "ani": 99.995, "matched_fragments": 2047, "total_fragments": 2052, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas putida", "strain": "strain=NCTC10936", "accession": "GCA_900455645.1", "taxid": 303, "species_taxid": 303, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9883, "matched_fragments": 2043, "total_fragments": 2052, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas putida", "strain": "strain=IPO3752", "accession": "GCA_013387005.1", "taxid": 303, "species_taxid": 303, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9772, 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"organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_021602465.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 87.2237, "matched_fragments": 1435, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas parafulva", "strain": "strain=DSM 17004", "accession": "GCA_000425765.1", "taxid": 157782, "species_taxid": 157782, "relation_to_type": "suspected-type", "validated": true, "ani": 85.7841, "matched_fragments": 1290, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000412675.1", "gtdb_species": "s__Pseudomonas_E putida", "ani": 100.0, "matched_fragments": 2051, "total_fragments": 2052, "gtdb_taxonomy": 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