{ "type": "genome", "identifier": "GCF_000413895.1", "organism": "Acinetobacter rudis CIP 110305", "title": "Acinetobacter rudis CIP 110305", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Broad Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000413895.1", "bioproject": "PRJNA224116", "biosample": "SAMN01087851", "wgs_master": "ATGI00000000.1", "refseq_category": "reference genome", "taxid": "421052", "species_taxid": "632955", "organism_name": "Acinetobacter rudis CIP 110305", "infraspecific_name": "strain=CIP 110305", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/06/21", "asm_name": "Acin_rudi_CIP_110305_V1", "asm_submitter": "Broad Institute", "gbrs_paired_asm": "GCA_000413895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/413/895/GCF_000413895.1_Acin_rudi_CIP_110305_V1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4066694", "genome_size_ungapped": "4005144", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "11", "contig_count": "48", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000413895.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3696", "protein_coding_gene_count": "3537", "non_coding_gene_count": "87", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-06-21", "dateModified": "2013-06-21", "datePublished": "2013-06-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter rudis CIP 110305" ], "sample_taxid": [ "421052" ], "sample_host_organism": [ "unknown" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Israel: Northern" ], "sample_host_location_id": [], "data_size": "1.135 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4066694", "Number of Sequences": "11", "Longest Sequences (bp)": "1165160", "N50 (bp)": "758841", "Gap Ratio (%)": "1.513514", "GCcontent (%)": "39.1", "Number of CDSs": "3598", "Average Protein Length": "313.8", "Coding Ratio (%)": "83.3", "Number of rRNAs": "15", "Number of tRNAs": "72", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter rudis", "strain": "strain=CIP 110305", "accession": "GCA_000413895.1", "taxid": 632955, "species_taxid": 632955, "relation_to_type": "type", "validated": true, "ani": 99.9945, "matched_fragments": 1335, "total_fragments": 1350, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter rudis", "strain": "strain=DSM 24031", "accession": "GCA_000829675.1", "taxid": 632955, "species_taxid": 632955, "relation_to_type": "type", "validated": true, "ani": 99.9255, "matched_fragments": 1233, "total_fragments": 1350, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter bohemicus", "strain": "strain=ANC 3994", "accession": "GCA_000367925.1", "taxid": 1435036, "species_taxid": 1435036, "relation_to_type": "type", "validated": true, "ani": 79.2897, "matched_fragments": 323, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=NCTC10305", "accession": "GCA_900444835.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 79.2345, "matched_fragments": 275, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pullicarnis", "strain": "strain=S23", "accession": "GCA_006352475.1", "taxid": 2576829, "species_taxid": 2576829, "relation_to_type": "type", "validated": true, "ani": 79.2092, "matched_fragments": 416, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter rongchengensis", "strain": "strain=WCHAc060115", "accession": "GCA_003611475.1", "taxid": 2419601, "species_taxid": 2419601, "relation_to_type": "type", "validated": true, "ani": 79.0685, "matched_fragments": 346, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter bereziniae", "strain": "strain=CIP 70.12", "accession": "GCA_000368925.1", "taxid": 106648, "species_taxid": 106648, "relation_to_type": "type", "validated": true, "ani": 79.0462, "matched_fragments": 374, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter sichuanensis", "strain": "strain=WCHAc060041", "accession": "GCA_003024515.2", "taxid": 2136183, "species_taxid": 2136183, "relation_to_type": "type", "validated": true, "ani": 79.0196, "matched_fragments": 369, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter defluvii", "strain": "strain=WCHA30", "accession": "GCA_001704615.3", "taxid": 1871111, "species_taxid": 1871111, "relation_to_type": "type", "validated": true, "ani": 78.9467, "matched_fragments": 356, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CIP 63.46", "accession": "GCA_000368145.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 78.9278, "matched_fragments": 367, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter proteolyticus", "strain": "strain=NIPH 809", "accession": "GCA_000367945.1", "taxid": 1776741, "species_taxid": 1776741, "relation_to_type": "type", "validated": true, "ani": 78.9276, "matched_fragments": 314, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tandoii", "strain": "strain=CIP 107469", "accession": "GCA_000400735.1", "taxid": 202954, "species_taxid": 202954, "relation_to_type": "type", "validated": true, "ani": 78.9022, "matched_fragments": 331, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=KCTC 12415", "accession": "GCA_000747725.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 78.897, "matched_fragments": 357, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter lanii", "strain": "strain=185", "accession": "GCA_011578285.1", "taxid": 2715163, "species_taxid": 2715163, "relation_to_type": "type", "validated": true, "ani": 78.8899, "matched_fragments": 294, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter piscicola", "strain": "strain=LW15", "accession": "GCA_002233755.1", "taxid": 2006115, "species_taxid": 2006115, "relation_to_type": "type", "validated": true, "ani": 78.8568, "matched_fragments": 344, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_020911985.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 78.7994, "matched_fragments": 309, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 78.7612, "matched_fragments": 311, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 78.7074, "matched_fragments": 338, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tandoii", "strain": "strain=DSM 14970", "accession": "GCA_000621065.1", "taxid": 202954, "species_taxid": 202954, "relation_to_type": "type", "validated": true, "ani": 78.6422, "matched_fragments": 315, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gyllenbergii", "strain": "strain=MTCC 11365", "accession": "GCA_000414075.1", "taxid": 134534, "species_taxid": 134534, "relation_to_type": "type", "validated": true, "ani": 78.5431, "matched_fragments": 298, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gyllenbergii", "strain": "strain=CIP 110306", "accession": "GCA_000413855.1", "taxid": 134534, "species_taxid": 134534, "relation_to_type": "type", "validated": true, "ani": 78.4487, "matched_fragments": 306, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter ihumii", "strain": "strain=Marseille-P8049", "accession": "GCA_900625095.1", "taxid": 2483802, "species_taxid": 2483802, "relation_to_type": "type", "validated": true, "ani": 78.4481, "matched_fragments": 259, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000829675.1", "gtdb_species": "s__Acinetobacter rudis", "ani": 99.9255, "matched_fragments": 1233, "total_fragments": 1350, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000367925.1", "gtdb_species": "s__Acinetobacter bohemicus", "ani": 79.2882, "matched_fragments": 324, "total_fragments": 1350, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.89", "min_intra_species_ani": "95.82", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.82", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001696605.3", "gtdb_species": "s__Acinetobacter wuhouensis", "ani": 79.2167, "matched_fragments": 352, "total_fragments": 1350, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.82", "min_intra_species_ani": "96.71", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_004345325.1", "gtdb_species": "s__Acinetobacter calcoaceticus_D", "ani": 79.1871, "matched_fragments": 385, "total_fragments": 1350, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006352475.1", "gtdb_species": "s__Acinetobacter pullicarnis", "ani": 79.1783, "matched_fragments": 416, "total_fragments": 1350, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000368925.1", "gtdb_species": "s__Acinetobacter bereziniae", "ani": 79.0336, "matched_fragments": 373, "total_fragments": 1350, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "97.29", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 53, "status": "-" }, { "accession": "GCF_003024515.2", "gtdb_species": 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haemolyticus_A", "ani": 78.9306, "matched_fragments": 265, "total_fragments": 1350, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011578285.1", "gtdb_species": "s__Acinetobacter lanii", "ani": 78.9246, "matched_fragments": 293, "total_fragments": 1350, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.20", "min_intra_species_ani": "97.20", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001704615.3", "gtdb_species": "s__Acinetobacter defluvii", "ani": 78.9226, 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311, "total_fragments": 1350, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000214135.1", "gtdb_species": "s__Acinetobacter sp000214135", "ani": 78.8774, "matched_fragments": 359, "total_fragments": 1350, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000368785.1", "gtdb_species": "s__Acinetobacter towneri", "ani": 78.8481, "matched_fragments": 319, "total_fragments": 1350, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.88", "min_intra_species_ani": "97.09", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 48, "status": "-" }, { "accession": "GCF_009707625.1", "gtdb_species": "s__Acinetobacter sp009707625", "ani": 78.8331, "matched_fragments": 285, "total_fragments": 1350, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002233755.1", "gtdb_species": "s__Acinetobacter piscicola", "ani": 78.8283, "matched_fragments": 346, "total_fragments": 1350, "gtdb_taxonomy": 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