{ "type": "genome", "identifier": "GCF_000414075.1", "organism": "Acinetobacter gyllenbergii CIP 110306 = MTCC 11365", "title": "Acinetobacter gyllenbergii CIP 110306 = MTCC 11365", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbial Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000414075.1", "bioproject": "PRJNA224116", "biosample": "SAMN02469997", "wgs_master": "ASQH00000000.1", "refseq_category": "na", "taxid": "1217657", "species_taxid": "134534", "organism_name": "Acinetobacter gyllenbergii CIP 110306 = MTCC 11365", "infraspecific_name": "strain=MTCC 11365", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/06/24", "asm_name": "Acinetobacter gyllenbergii", "asm_submitter": "Institute of Microbial Technology", "gbrs_paired_asm": "GCA_000414075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/414/075/GCF_000414075.1_Acinetobacter_gyllenbergii", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4318988", "genome_size_ungapped": "4318988", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "48", "contig_count": "48", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000414075.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "4175", "protein_coding_gene_count": "4030", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-06-24", "dateModified": "2013-06-24", "datePublished": "2013-06-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter gyllenbergii CIP 110306 = MTCC 11365" ], "sample_taxid": [ "1217657" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Netherlands: Leiden University Hospital" ], "sample_host_location_id": [], "data_size": "1.226 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4318988", "Number of Sequences": "48", "Longest Sequences (bp)": "747876", "N50 (bp)": "212525", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.0", "Number of CDSs": "4078", "Average Protein Length": "304.3", "Coding Ratio (%)": "86.2", "Number of rRNAs": "3", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter gyllenbergii", "strain": "strain=MTCC 11365", 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280145, "species_taxid": 280145, "relation_to_type": "type", "validated": true, "ani": 88.8415, "matched_fragments": 1056, "total_fragments": 1417, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter vivianii", "strain": "strain=CCM 8642", "accession": "GCA_014635885.1", "taxid": 1776742, "species_taxid": 1776742, "relation_to_type": "type", "validated": true, "ani": 85.428, "matched_fragments": 1000, "total_fragments": 1417, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter courvalinii", "strain": "strain=CCUG 67960", "accession": "GCA_008802255.1", "taxid": 280147, "species_taxid": 280147, "relation_to_type": "type", "validated": true, "ani": 85.398, "matched_fragments": 1002, "total_fragments": 1417, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter modestus", "strain": "strain=CCM 8639", "accession": "GCA_014636095.1", "taxid": 1776740, "species_taxid": 1776740, "relation_to_type": "type", "validated": true, "ani": 84.3389, "matched_fragments": 793, "total_fragments": 1417, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter venetianus", "strain": "strain=RAG-1", "accession": "GCA_000271425.1", "taxid": 52133, "species_taxid": 52133, "relation_to_type": "type", "validated": true, "ani": 83.2657, "matched_fragments": 794, "total_fragments": 1417, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter parvus", "strain": "strain=DSM 16617", "accession": "GCA_000248155.2", "taxid": 134533, "species_taxid": 134533, "relation_to_type": "type", "validated": true, "ani": 83.2031, "matched_fragments": 620, "total_fragments": 1417, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter parvus", "strain": "strain=CIP 108168", "accession": "GCA_000368025.1", "taxid": 134533, "species_taxid": 134533, "relation_to_type": "type", "validated": true, "ani": 83.2025, "matched_fragments": 640, "total_fragments": 1417, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=NCTC10305", "accession": "GCA_900444835.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 82.6753, "matched_fragments": 751, "total_fragments": 1417, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter junii", "strain": "strain=NCTC10307", "accession": "GCA_900444875.1", "taxid": 40215, "species_taxid": 40215, "relation_to_type": "type", "validated": true, "ani": 82.4672, "matched_fragments": 712, "total_fragments": 1417, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 80.02, "matched_fragments": 511, "total_fragments": 1417, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_020911985.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 79.984, "matched_fragments": 517, "total_fragments": 1417, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=CIP70.29", "accession": "GCA_024390955.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 79.9462, "matched_fragments": 525, "total_fragments": 1417, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000413855.1", "gtdb_species": "s__Acinetobacter gyllenbergii", "ani": 99.9922, "matched_fragments": 1390, "total_fragments": 1417, "gtdb_taxonomy": 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