{
    "type": "genome",
    "identifier": "GCF_000416985.1",
    "organism": "Sphingobacterium paucimobilis HER1398",
    "title": "Sphingobacterium paucimobilis HER1398",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of British Columbia",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000416985.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02471610",
        "wgs_master": "ATDL00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1346330",
        "species_taxid": "1385985",
        "organism_name": "Sphingobacterium paucimobilis HER1398",
        "infraspecific_name": "strain=HER1398",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/01",
        "asm_name": "23.k55",
        "asm_submitter": "University of British Columbia",
        "gbrs_paired_asm": "GCA_000416985.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/416/985/GCF_000416985.1_23.k55",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5126359",
        "genome_size_ungapped": "5126359",
        "gc_percent": "41.000000",
        "replicon_count": "0",
        "scaffold_count": "23",
        "contig_count": "23",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000416985.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "4395",
        "protein_coding_gene_count": "4297",
        "non_coding_gene_count": "89",
        "pubmed_id": "23929486"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-01",
    "dateModified": "2013-07-01",
    "datePublished": "2013-07-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sphingobacterium paucimobilis HER1398"
        ],
        "sample_taxid": [
            "1346330"
        ],
        "sample_host_organism": [
            "Bombyx mori"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "India: KA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.462 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5126359",
        "Number of Sequences": "23",
        "Longest Sequences (bp)": "1001915",
        "N50 (bp)": "416944",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.9",
        "Number of CDSs": "4234",
        "Average Protein Length": "358.6",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "8",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Sphingobacterium paucimobilis",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1671,
                "total_fragments": 1697,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sphingobacterium faecale",
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                "accession": "GCA_016746095.1",
                "taxid": 2803775,
                "species_taxid": 2803775,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Sphingobacterium tabacisoli",
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                "status": "below_threshold"
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            {
                "organism_name": "Sphingobacterium yanglingense",
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                "species_taxid": 1437280,
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                "ani": 83.0676,
                "matched_fragments": 874,
                "total_fragments": 1697,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobacterium nematocida",
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                "species_taxid": 1513896,
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                "ani": 80.254,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobacterium soli",
                "strain": "strain=CGMCC 1.15966",
                "accession": "GCA_014644335.1",
                "taxid": 1914757,
                "species_taxid": 1914757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.256,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobacterium rhinopitheci",
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                "accession": "GCA_022627575.1",
                "taxid": 2781960,
                "species_taxid": 2781960,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1517,
                "matched_fragments": 194,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobacterium spiritivorum",
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                "accession": "GCA_000143765.1",
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                "species_taxid": 258,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.1386,
                "matched_fragments": 126,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobacterium psychroaquaticum",
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                "accession": "GCA_900177625.1",
                "taxid": 561061,
                "species_taxid": 561061,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7511,
                "matched_fragments": 139,
                "total_fragments": 1697,
                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_000416985.1",
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            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "paucimobilis",
        "HER1398"
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}