{ "type": "genome", "identifier": "GCF_000417905.1", "organism": "Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759", "title": "Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Center for Bio/Molecular Science & Engineering, Naval Research Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000417905.1", "bioproject": "PRJNA224116", "biosample": "SAMN02472057", "wgs_master": "ATFJ00000000.1", "refseq_category": "na", "taxid": "1219067", "species_taxid": "691", "organism_name": "Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759", "infraspecific_name": "strain=ATCC 14048", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/02", "asm_name": "ASM41790v1", "asm_submitter": "Center for Bio/Molecular Science & Engineering, Naval Research Laboratory", "gbrs_paired_asm": "GCA_000417905.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/417/905/GCF_000417905.1_ASM41790v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5130031", "genome_size_ungapped": "5130031", "gc_percent": "45.000000", "replicon_count": "0", "scaffold_count": "45", "contig_count": "45", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-03", "total_gene_count": "4676", "protein_coding_gene_count": "4516", "non_coding_gene_count": "130", "pubmed_id": "23929482" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-02", "dateModified": "2013-07-02", "datePublished": "2013-07-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759" ], "sample_taxid": [ "1219067" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.471 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5130031", "Number of Sequences": "45", "Longest Sequences (bp)": "435996", "N50 (bp)": "192071", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.0", "Number of CDSs": "4513", "Average Protein Length": "323.2", "Coding Ratio (%)": "85.3", "Number of rRNAs": "10", "Number of tRNAs": "100", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio natriegens", "strain": "strain=ATCC 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pelagius", "strain": "strain=ATCC 25916", "accession": "GCA_024347575.1", "taxid": 28169, "species_taxid": 28169, "relation_to_type": "type", "validated": true, "ani": 79.7971, "matched_fragments": 447, "total_fragments": 1687, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fortis", "strain": "strain=LMG 21557", "accession": "GCA_024347475.1", "taxid": 212667, "species_taxid": 212667, "relation_to_type": "type", "validated": true, "ani": 79.7222, "matched_fragments": 448, "total_fragments": 1687, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000417905.1", "gtdb_species": "s__Vibrio natriegens", "ani": 100.0, "matched_fragments": 1684, "total_fragments": 1687, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.327, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Vibrio", "natriegens", "NBRC", "15636", "=", "ATCC", "14048", "=", "DSM", "759" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }