{ "type": "genome", "identifier": "GCF_000418365.1", "organism": "Corynebacterium terpenotabidum Y-11", "title": "Corynebacterium terpenotabidum Y-11", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bielefeld University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000418365.1", "bioproject": "PRJNA224116", "biosample": "SAMN02603028", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1200352", "species_taxid": "89154", "organism_name": "Corynebacterium terpenotabidum Y-11", "infraspecific_name": "strain=Y-11", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/05", "asm_name": "ASM41836v1", "asm_submitter": "Bielefeld University", "gbrs_paired_asm": "GCA_000418365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/418/365/GCF_000418365.1_ASM41836v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2751233", "genome_size_ungapped": "2751233", "gc_percent": "67.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000418365.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "2473", "protein_coding_gene_count": "2376", "non_coding_gene_count": "75", "pubmed_id": "25197436" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-05", "dateModified": "2013-07-05", "datePublished": "2013-07-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium terpenotabidum Y-11" ], "sample_taxid": [ "1200352" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.751 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2751233", "Number of Sequences": "1", "Longest Sequences (bp)": "2751233", "N50 (bp)": "2751233", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.0", "Number of CDSs": "2456", "Average Protein Length": "337.2", "Coding Ratio (%)": "90.3", "Number of rRNAs": "15", "Number of tRNAs": "64", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium terpenotabidum", "strain": "strain=Y-11", "accession": "GCA_000418365.1", "taxid": 89154, "species_taxid": 89154, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 916, "total_fragments": 917, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium variabile", "strain": "strain=NBRC 15286", "accession": "GCA_006539825.1", "taxid": 1727, "species_taxid": 1727, "relation_to_type": "type", "validated": true, "ani": 83.8999, "matched_fragments": 694, "total_fragments": 917, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium nuruki", "strain": "strain=S6-4", "accession": "GCA_007970465.1", "taxid": 1032851, "species_taxid": 1032851, "relation_to_type": "type", "validated": true, "ani": 81.9656, "matched_fragments": 602, "total_fragments": 917, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium nuruki", "strain": "strain=S6-4", "accession": "GCA_000213935.2", "taxid": 1032851, "species_taxid": 1032851, "relation_to_type": "type", "validated": true, "ani": 81.8184, "matched_fragments": 589, "total_fragments": 917, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium neomassiliense", "strain": "strain=Marseille-P3888", "accession": "GCA_900626215.1", "taxid": 2079482, "species_taxid": 2079482, "relation_to_type": "type", "validated": true, "ani": 80.9749, "matched_fragments": 598, "total_fragments": 917, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium bovis", "strain": "strain=FDAARGOS_1052", "accession": "GCA_016128075.1", "taxid": 36808, "species_taxid": 36808, "relation_to_type": "type", "validated": true, "ani": 79.2874, "matched_fragments": 331, "total_fragments": 917, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinocatenispora comari", "strain": "strain=NUM-2625", "accession": "GCA_017312725.1", "taxid": 2807577, "species_taxid": 2807577, "relation_to_type": "type", "validated": true, "ani": 75.6988, "matched_fragments": 136, "total_fragments": 917, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000418365.1", "gtdb_species": "s__Corynebacterium terpenotabidum", "ani": 100.0, "matched_fragments": 916, "total_fragments": 917, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_006539825.1", "gtdb_species": "s__Corynebacterium variabile", "ani": 83.9134, "matched_fragments": 693, "total_fragments": 917, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.53", "min_intra_species_ani": "98.15", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.86", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_902782855.1", "gtdb_species": "s__Corynebacterium sp902782855", "ani": 83.0819, "matched_fragments": 569, "total_fragments": 917, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007970465.1", "gtdb_species": "s__Corynebacterium nuruki", "ani": 82.0018, "matched_fragments": 603, "total_fragments": 917, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.35", "min_intra_species_ani": "98.70", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900049755.1", "gtdb_species": "s__Corynebacterium provencense", "ani": 81.0901, "matched_fragments": 581, "total_fragments": 917, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.28", "min_intra_species_ani": "98.82", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_019114135.1", "gtdb_species": "s__Corynebacterium avicola", "ani": 80.7456, "matched_fragments": 493, "total_fragments": 917, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007673095.1", "gtdb_species": "s__Corynebacterium sp002363255", "ani": 79.9076, "matched_fragments": 427, "total_fragments": 917, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.0, "doubling_h": -0.089, "growth_tmp": 35.0, "optimum_tmp": 28.0, "optimum_ph": 7.292, "genome_size": 2751232.4, "gc_content": 67.0, "coding_genes": 2349.667, "rRNA16S_genes": 5.0, "tRNA_genes": 57.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Corynebacterium", "terpenotabidum", "Y-11" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }