{
    "type": "genome",
    "identifier": "GCF_000418455.1",
    "organism": "Streptomyces rapamycinicus NRRL 5491",
    "title": "Streptomyces rapamycinicus NRRL 5491",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Kaiserslautern",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000418455.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02604192",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "1343740",
        "species_taxid": "1226757",
        "organism_name": "Streptomyces rapamycinicus NRRL 5491",
        "infraspecific_name": "strain=NRRL 5491",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Chromosome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/08",
        "asm_name": "ASM41845v1",
        "asm_submitter": "University of Kaiserslautern",
        "gbrs_paired_asm": "GCA_000418455.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/418/455/GCF_000418455.1_ASM41845v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "12700734",
        "genome_size_ungapped": "12385522",
        "gc_percent": "71.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000418455.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "10489",
        "protein_coding_gene_count": "9865",
        "non_coding_gene_count": "70",
        "pubmed_id": "23929477"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-08",
    "dateModified": "2013-07-08",
    "datePublished": "2013-07-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces rapamycinicus NRRL 5491"
        ],
        "sample_taxid": [
            "1343740"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "3.311 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 1.04,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "12700734",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "12700734",
        "N50 (bp)": "12700734",
        "Gap Ratio (%)": "2.481880",
        "GCcontent (%)": "71.1",
        "Number of CDSs": "10456",
        "Average Protein Length": "341.6",
        "Coding Ratio (%)": "84.4",
        "Number of rRNAs": "1",
        "Number of tRNAs": "91",
        "Number of CRISPRs": "8"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Streptomyces rapamycinicus",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Streptomyces rapamycinicus",
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            {
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            {
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                "ani_threshold": 95,
                "status": "inconclusive"
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                "matched_fragments": 3218,
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                "status": "inconclusive"
            },
            {
                "organism_name": "Streptomyces javensis",
                "strain": "strain=DSM 41764",
                "accession": "GCA_016103505.1",
                "taxid": 114698,
                "species_taxid": 114698,
                "relation_to_type": "type",
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                "ani": 94.4462,
                "matched_fragments": 2361,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Streptomyces albireticuli",
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                "accession": "GCA_021228125.1",
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                "species_taxid": 1940,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9236,
                "matched_fragments": 1494,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces rimosus subsp. rimosus",
                "strain": "strain=R7",
                "accession": "GCA_022760195.1",
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                "species_taxid": 1927,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces paromomycinus",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
        "cc_result": {
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                "accession": "GCF_003675955.1",
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                "num_clustered_genomes": 3,
                "status": "conclusive"
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            {
                "accession": "GCF_017874715.1",
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            },
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 0.208,
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    "_genome_taxon": [
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        "rapamycinicus",
        "NRRL",
        "5491"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}