{ "type": "genome", "identifier": "GCF_000419685.1", "organism": "Flavobacterium antarcticum DSM 19726", "title": "Flavobacterium antarcticum DSM 19726", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000419685.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441252", "wgs_master": "ATTM00000000.1", "refseq_category": "reference genome", "taxid": "1111730", "species_taxid": "271155", "organism_name": "Flavobacterium antarcticum DSM 19726", "infraspecific_name": "strain=DSM 19726", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/09", "asm_name": "ASM41968v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000419685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/419/685/GCF_000419685.1_ASM41968v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3079036", "genome_size_ungapped": "3079036", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000419685.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "2790", "protein_coding_gene_count": "2728", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-09", "dateModified": "2013-07-09", "datePublished": "2013-07-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium antarcticum DSM 19726" ], "sample_taxid": [ "1111730" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "0.861 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3079036", "Number of Sequences": "15", "Longest Sequences (bp)": "633003", "N50 (bp)": "453607", "Gap Ratio (%)": "0.002761", "GCcontent (%)": "35.0", "Number of CDSs": "2714", "Average Protein Length": "331.8", "Coding Ratio (%)": "87.7", "Number of rRNAs": "4", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium antarcticum", "strain": "strain=DSM 19726", "accession": "GCA_000419685.1", "taxid": 271155, "species_taxid": 271155, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1019, "total_fragments": 1020, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium tegetincola", "strain": "strain=DSM 22377", "accession": "GCA_000425485.1", "taxid": 150172, "species_taxid": 150172, "relation_to_type": "type", "validated": true, "ani": 82.1714, "matched_fragments": 626, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soli", "strain": "strain=DSM 19725", "accession": "GCA_000422705.1", "taxid": 344881, "species_taxid": 344881, "relation_to_type": "type", "validated": true, "ani": 78.7448, "matched_fragments": 314, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limicola", "strain": "strain=DSM 15094", "accession": "GCA_003634755.1", "taxid": 180441, "species_taxid": 180441, "relation_to_type": "type", "validated": true, "ani": 78.214, "matched_fragments": 221, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sinopsychrotolerans", "strain": "strain=CGMCC 1.8704", "accession": "GCA_900110375.1", "taxid": 604089, "species_taxid": 604089, "relation_to_type": "type", "validated": true, "ani": 78.1923, "matched_fragments": 218, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium plurextorum", "strain": "strain=CCUG 60112", "accession": "GCA_002217395.1", "taxid": 1114867, "species_taxid": 1114867, "relation_to_type": "type", "validated": true, "ani": 78.0578, "matched_fragments": 220, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium faecale", "strain": "strain=WV33", "accession": "GCA_003076455.1", "taxid": 1355330, "species_taxid": 1355330, "relation_to_type": "type", "validated": true, "ani": 78.0496, "matched_fragments": 165, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium caseinilyticum", "strain": "strain=AT-3-2", "accession": "GCA_004349085.1", "taxid": 2541732, "species_taxid": 2541732, "relation_to_type": "type", "validated": true, "ani": 78.0392, "matched_fragments": 223, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibernum", "strain": "strain=ATCC 51468", "accession": "GCA_002217315.1", "taxid": 37752, "species_taxid": 37752, "relation_to_type": "type", "validated": true, "ani": 77.9803, "matched_fragments": 229, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium agrisoli", "strain": "strain=SE-1-e", "accession": "GCA_016522065.1", "taxid": 2793066, "species_taxid": 2793066, "relation_to_type": "type", "validated": true, "ani": 77.94, "matched_fragments": 173, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fluvii", "strain": "strain=DSM 19978", "accession": "GCA_900129545.1", "taxid": 468056, "species_taxid": 468056, "relation_to_type": "type", "validated": true, "ani": 77.9381, "matched_fragments": 192, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium luteum", "strain": "strain=NBRC 112527", "accession": "GCA_008806775.1", "taxid": 2026654, "species_taxid": 2026654, "relation_to_type": "type", "validated": true, "ani": 77.9289, "matched_fragments": 197, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium franklandianum", "strain": "strain=LB3P56", "accession": "GCA_007097365.1", "taxid": 2594430, "species_taxid": 2594430, "relation_to_type": "type", "validated": true, "ani": 77.9069, "matched_fragments": 202, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium degerlachei", "strain": "strain=DSM 15718", "accession": "GCA_900106645.1", "taxid": 229203, "species_taxid": 229203, "relation_to_type": "type", "validated": true, "ani": 77.905, "matched_fragments": 189, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium granuli", "strain": "strain=DSM 17797", "accession": "GCA_003003155.1", "taxid": 280093, "species_taxid": 280093, "relation_to_type": "type", "validated": true, "ani": 77.8692, "matched_fragments": 187, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium granuli", "strain": "strain=DSM 19729", "accession": "GCA_900129705.1", "taxid": 280093, "species_taxid": 280093, "relation_to_type": "type", "validated": true, "ani": 77.8416, "matched_fragments": 184, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium proteolyticum", "strain": "strain=1Y8A", "accession": "GCA_015223105.1", "taxid": 2911683, "species_taxid": 2911683, "relation_to_type": "type", "validated": true, "ani": 77.7937, "matched_fragments": 207, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": "GCA_007097265.1", "taxid": 2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 77.7503, "matched_fragments": 223, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 77.742, "matched_fragments": 206, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fryxellicola", "strain": "strain=DSM 16209", "accession": "GCA_001637185.1", "taxid": 249352, "species_taxid": 249352, "relation_to_type": "type", "validated": true, "ani": 77.7104, "matched_fragments": 214, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium channae", "strain": "strain=KSM-R2A30", "accession": "GCA_021172165.1", "taxid": 2897181, "species_taxid": 2897181, "relation_to_type": "type", "validated": true, "ani": 77.3309, "matched_fragments": 203, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium lacus", "strain": "strain=CGMCC 1.12504", "accession": "GCA_003268815.1", "taxid": 1353778, "species_taxid": 1353778, "relation_to_type": "type", "validated": true, "ani": 77.2371, "matched_fragments": 198, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sediminilitoris", "strain": "strain=YSM-43", "accession": "GCA_023008245.1", "taxid": 2024526, 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