{
    "type": "genome",
    "identifier": "GCF_000419765.1",
    "organism": "Rhizobium mongolense USDA 1844",
    "title": "Rhizobium mongolense USDA 1844",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000419765.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02440561",
        "wgs_master": "ATTQ00000000.1",
        "refseq_category": "na",
        "taxid": "1079460",
        "species_taxid": "57676",
        "organism_name": "Rhizobium mongolense USDA 1844",
        "infraspecific_name": "strain=USDA 1844",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/09",
        "asm_name": "ASM41976v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000419765.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/419/765/GCF_000419765.1_ASM41976v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7166346",
        "genome_size_ungapped": "7166346",
        "gc_percent": "59.500000",
        "replicon_count": "0",
        "scaffold_count": "96",
        "contig_count": "96",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000419765.1-RS_2024_04_29",
        "annotation_date": "2024-04-29",
        "total_gene_count": "7117",
        "protein_coding_gene_count": "6563",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-09",
    "dateModified": "2013-07-09",
    "datePublished": "2013-07-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhizobium mongolense USDA 1844"
        ],
        "sample_taxid": [
            "1079460"
        ],
        "sample_host_organism": [
            "Medicago ruthenica"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "2.023 MB",
        "sample_ph_range": {
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            "max": 58.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7166346",
        "Number of Sequences": "96",
        "Longest Sequences (bp)": "564818",
        "N50 (bp)": "300544",
        "Gap Ratio (%)": "0.001368",
        "GCcontent (%)": "59.5",
        "Number of CDSs": "7117",
        "Average Protein Length": "280.7",
        "Coding Ratio (%)": "83.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Rhizobium mongolense",
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                "relation_to_type": "type",
                "validated": true,
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            },
            {
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            },
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium vallis",
                "strain": "strain=CCBAU 65647",
                "accession": "GCA_003985155.1",
                "taxid": 634290,
                "species_taxid": 634290,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium croatiense",
                "strain": "strain=13T",
                "accession": "GCA_019793465.1",
                "taxid": 2867516,
                "species_taxid": 2867516,
                "relation_to_type": "type",
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                "ani": 81.674,
                "matched_fragments": 1159,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium redzepovicii",
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                "relation_to_type": "type",
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            },
            {
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                "accession": "GCA_003985125.1",
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            },
            {
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            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Shinella zoogloeoides",
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                "status": "below_threshold"
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            {
                "organism_name": "Shinella pollutisoli",
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                "accession": "GCF_000419765.1",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}