{
    "type": "genome",
    "identifier": "GCF_000420245.1",
    "organism": "Psychromonas hadalis ATCC BAA-638",
    "title": "Psychromonas hadalis ATCC BAA-638",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000420245.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02440919",
        "wgs_master": "ATUO00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1278302",
        "species_taxid": "211669",
        "organism_name": "Psychromonas hadalis ATCC BAA-638",
        "infraspecific_name": "strain=ATCC BAA-638",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/09",
        "asm_name": "ASM42024v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000420245.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/420/245/GCF_000420245.1_ASM42024v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3979980",
        "genome_size_ungapped": "3979980",
        "gc_percent": "39.000000",
        "replicon_count": "0",
        "scaffold_count": "351",
        "contig_count": "351",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000420245.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "3746",
        "protein_coding_gene_count": "3541",
        "non_coding_gene_count": "49",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-09",
    "dateModified": "2013-07-09",
    "datePublished": "2013-07-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Psychromonas hadalis ATCC BAA-638"
        ],
        "sample_taxid": [
            "1278302"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.134 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3979980",
        "Number of Sequences": "351",
        "Longest Sequences (bp)": "83500",
        "N50 (bp)": "21332",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.1",
        "Number of CDSs": "3553",
        "Average Protein Length": "308.1",
        "Coding Ratio (%)": "82.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Psychromonas hadalis",
                "strain": "strain=ATCC BAA-638",
                "accession": "GCA_000420245.1",
                "taxid": 211669,
                "species_taxid": 211669,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1141,
                "total_fragments": 1152,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Psychromonas aquimarina",
                "strain": "strain=ATCC BAA-1526",
                "accession": "GCA_000428725.1",
                "taxid": 444919,
                "species_taxid": 444919,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4655,
                "matched_fragments": 259,
                "total_fragments": 1152,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Psychromonas ossibalaenae",
                "strain": "strain=JAMM 0738",
                "accession": "GCA_000381745.1",
                "taxid": 444922,
                "species_taxid": 444922,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3155,
                "matched_fragments": 311,
                "total_fragments": 1152,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Psychromonas antarctica",
                "strain": "strain=DSM 10704",
                "accession": "GCA_022267535.1",
                "taxid": 67573,
                "species_taxid": 67573,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2354,
                "matched_fragments": 241,
                "total_fragments": 1152,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Psychromonas arctica",
                "strain": "strain=DSM 14288",
                "accession": "GCA_000482725.1",
                "taxid": 168275,
                "species_taxid": 168275,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2213,
                "matched_fragments": 264,
                "total_fragments": 1152,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Psychromonas ingrahamii",
                "strain": "strain=37",
                "accession": "GCA_000015285.1",
                "taxid": 357794,
                "species_taxid": 357794,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7816,
                "matched_fragments": 222,
                "total_fragments": 1152,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio cortegadensis",
                "strain": "strain=CECT 7227",
                "accession": "GCA_024347395.1",
                "taxid": 1328770,
                "species_taxid": 1328770,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4931,
                "matched_fragments": 56,
                "total_fragments": 1152,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella electrodiphila",
                "strain": "strain=DSM 24955",
                "accession": "GCA_023283985.1",
                "taxid": 934143,
                "species_taxid": 934143,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1994,
                "matched_fragments": 58,
                "total_fragments": 1152,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium iliopiscarium",
                "strain": "strain=ATCC 51760",
                "accession": "GCA_000950265.1",
                "taxid": 56192,
                "species_taxid": 56192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1965,
                "matched_fragments": 63,
                "total_fragments": 1152,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium iliopiscarium",
                "strain": "strain=ATCC 51760",
                "accession": "GCA_003026395.1",
                "taxid": 56192,
                "species_taxid": 56192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1814,
                "matched_fragments": 65,
                "total_fragments": 1152,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio artabrorum",
                "strain": "strain=CECT 7226",
                "accession": "GCA_024347295.1",
                "taxid": 446374,
                "species_taxid": 446374,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0236,
                "matched_fragments": 54,
                "total_fragments": 1152,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella saliphila",
                "strain": "strain=JCM 32304",
                "accession": "GCA_014648295.1",
                "taxid": 2282698,
                "species_taxid": 2282698,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7927,
                "matched_fragments": 50,
                "total_fragments": 1152,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio nitrifigilis",
                "strain": "strain=NFV-1",
                "accession": "GCA_015686695.1",
                "taxid": 2789781,
                "species_taxid": 2789781,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7386,
                "matched_fragments": 50,
                "total_fragments": 1152,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000420245.1",
                "gtdb_species": "s__Psychromonas hadalis",
                "ani": 100.0,
                "matched_fragments": 1141,
                "total_fragments": 1152,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Psychromonadaceae;g__Psychromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002835995.1",
                "gtdb_species": "s__Psychromonas sp002835995",
                "ani": 80.2278,
                "matched_fragments": 598,
                "total_fragments": 1152,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Psychromonadaceae;g__Psychromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002835465.1",
                "gtdb_species": "s__Psychromonas sp002835465",
                "ani": 79.7943,
                "matched_fragments": 442,
                "total_fragments": 1152,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Psychromonadaceae;g__Psychromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000153405.2",
                "gtdb_species": "s__Psychromonas sp000153405",
                "ani": 78.5585,
                "matched_fragments": 237,
                "total_fragments": 1152,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Psychromonadaceae;g__Psychromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000428725.1",
                "gtdb_species": "s__Psychromonas aquimarina",
                "ani": 78.4902,
                "matched_fragments": 256,
                "total_fragments": 1152,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Psychromonadaceae;g__Psychromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013619145.1",
                "gtdb_species": "s__Psychromonas sp013619145",
                "ani": 78.3786,
                "matched_fragments": 310,
                "total_fragments": 1152,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Psychromonadaceae;g__Psychromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000381745.1",
                "gtdb_species": "s__Psychromonas ossibalaenae",
                "ani": 78.3327,
                "matched_fragments": 309,
                "total_fragments": 1152,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Psychromonadaceae;g__Psychromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003318165.1",
                "gtdb_species": "s__Psychromonas sp003318165",
                "ani": 78.2926,
                "matched_fragments": 222,
                "total_fragments": 1152,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Psychromonadaceae;g__Psychromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000470315.2",
                "gtdb_species": "s__Psychromonas sp000470315",
                "ani": 78.2379,
                "matched_fragments": 253,
                "total_fragments": 1152,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Psychromonadaceae;g__Psychromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009828855.1",
                "gtdb_species": "s__Psychromonas sp009828855",
                "ani": 78.1281,
                "matched_fragments": 251,
                "total_fragments": 1152,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Psychromonadaceae;g__Psychromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.96",
                "min_intra_species_ani": "98.96",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_018860585.1",
                "gtdb_species": "s__Colwellia sp018860585",
                "ani": 76.0405,
                "matched_fragments": 71,
                "total_fragments": 1152,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002076895.1",
                "gtdb_species": "s__Cognaticolwellia beringensis",
                "ani": 76.0183,
                "matched_fragments": 58,
                "total_fragments": 1152,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Cognaticolwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": 0.176,
        "doubling_h": 0.5,
        "growth_tmp": 6.0,
        "optimum_tmp": 6.0,
        "optimum_ph": 8.064,
        "genome_size": 3982195.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Psychromonas",
        "hadalis",
        "ATCC",
        "BAA-638"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}