{ "type": "genome", "identifier": "GCF_000420445.1", "organism": "Actinotignum urinale DSM 15805", "title": "Actinotignum urinale DSM 15805", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000420445.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441584", "wgs_master": "ATUY00000000.1", "refseq_category": "reference genome", "taxid": "1120933", "species_taxid": "190146", "organism_name": "Actinotignum urinale DSM 15805", "infraspecific_name": "strain=DSM 15805", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/09", "asm_name": "ASM42044v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000420445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/420/445/GCF_000420445.1_ASM42044v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1920341", "genome_size_ungapped": "1920321", "gc_percent": "51.000000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000420445.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "1720", "protein_coding_gene_count": "1640", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-09", "dateModified": "2013-07-09", "datePublished": "2013-07-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinotignum urinale DSM 15805" ], "sample_taxid": [ "1120933" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": 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"total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotignum schaalii", "strain": "strain=CCUG 27420", "accession": "GCA_000724605.1", "taxid": 59505, "species_taxid": 59505, "relation_to_type": "type", "validated": true, "ani": 76.8383, "matched_fragments": 55, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotignum schaalii", "strain": "strain=DSM 15541", "accession": "GCA_000429205.1", "taxid": 59505, "species_taxid": 59505, "relation_to_type": "type", "validated": true, "ani": 76.8373, "matched_fragments": 54, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotignum timonense", "strain": "strain=type strain: Marseille-P2803", "accession": "GCA_900155575.1", "taxid": 1870995, "species_taxid": 1870995, "relation_to_type": "type", "validated": true, "ani": 76.7728, "matched_fragments": 56, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000420445.1", "gtdb_species": "s__Actinotignum urinale", "ani": 100.0, "matched_fragments": 621, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinotignum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.41", "min_intra_species_ani": "99.41", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000411135.1", "gtdb_species": "s__Actinotignum schaalii_A", "ani": 76.9481, "matched_fragments": 50, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinotignum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003957255.1", "gtdb_species": "s__Actinotignum sanguinis", "ani": 76.8709, "matched_fragments": 54, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinotignum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000724605.1", "gtdb_species": "s__Actinotignum schaalii", "ani": 76.8383, "matched_fragments": 55, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinotignum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900155575.1", "gtdb_species": "s__Actinotignum timonense", "ani": 76.7728, "matched_fragments": 56, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinotignum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.14", "min_intra_species_ani": "98.55", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 1920341.0, "gc_content": 50.8, "coding_genes": 1603.0, "rRNA16S_genes": 3.0, "tRNA_genes": 46.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, 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