{
    "type": "genome",
    "identifier": "GCF_000420525.1",
    "organism": "Aquaspirillum serpens DSM 68",
    "title": "Aquaspirillum serpens DSM 68",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000420525.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02440573",
        "wgs_master": "ATVC00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1121004",
        "species_taxid": "190",
        "organism_name": "Aquaspirillum serpens DSM 68",
        "infraspecific_name": "strain=DSM 68",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/09",
        "asm_name": "ASM42052v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000420525.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/420/525/GCF_000420525.1_ASM42052v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2612795",
        "genome_size_ungapped": "2612795",
        "gc_percent": "50.000000",
        "replicon_count": "0",
        "scaffold_count": "119",
        "contig_count": "119",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000420525.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "2565",
        "protein_coding_gene_count": "2447",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-09",
    "dateModified": "2013-07-09",
    "datePublished": "2013-07-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aquaspirillum serpens DSM 68"
        ],
        "sample_taxid": [
            "1121004"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.747 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2612795",
        "Number of Sequences": "119",
        "Longest Sequences (bp)": "99578",
        "N50 (bp)": "34525",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "49.8",
        "Number of CDSs": "2370",
        "Average Protein Length": "326.6",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "5",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Aquaspirillum serpens",
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                "accession": "GCA_000420525.1",
                "taxid": 190,
                "species_taxid": 190,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 808,
                "total_fragments": 814,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rivicola pingtungensis",
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                "accession": "GCA_003201855.1",
                "taxid": 1054498,
                "species_taxid": 1054498,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 74,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vogesella urethralis",
                "strain": "strain=YM-1",
                "accession": "GCA_007644045.2",
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                "species_taxid": 2592656,
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                "status": "below_threshold"
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        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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            {
                "accession": "GCF_000420525.1",
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                "total_fragments": 814,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Aquaspirillaceae;g__Aquaspirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003201855.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Aquaspirillaceae;g__Rivicola",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009707705.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_002002905.1",
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                "matched_fragments": 84,
                "total_fragments": 814,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Aquaspirillaceae;g__Rivicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007644045.2",
                "gtdb_species": "s__Vogesella urethralis",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chromobacteriaceae;g__Vogesella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 28.333,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 2615391.0,
        "gc_content": 49.8,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Aquaspirillum",
        "serpens",
        "DSM",
        "68"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}