{ "type": "genome", "identifier": "GCF_000420565.1", "organism": "Bifidobacterium magnum DSM 20222", "title": "Bifidobacterium magnum DSM 20222", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000420565.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441586", "wgs_master": "ATVE00000000.1", "refseq_category": "reference genome", "taxid": "1121108", "species_taxid": "1692", "organism_name": "Bifidobacterium magnum DSM 20222", "infraspecific_name": "strain=DSM 20222", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/09", "asm_name": "ASM42056v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000420565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/420/565/GCF_000420565.1_ASM42056v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1825255", "genome_size_ungapped": "1825255", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000420565.1-RS_2024_04_26", "annotation_date": "2024-04-26", "total_gene_count": "1590", "protein_coding_gene_count": "1501", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-09", "dateModified": "2013-07-09", "datePublished": "2013-07-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium magnum DSM 20222" ], "sample_taxid": [ "1121108" ], "sample_host_organism": [ "Oryctolagus cuniculus" ], "sample_host_organism_id": [], "sample_host_disease": [], 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"Bifidobacterium castoris", "strain": "strain=2020B", "accession": "GCA_003952025.1", "taxid": 2306972, "species_taxid": 2306972, "relation_to_type": "type", "validated": true, "ani": 79.3361, "matched_fragments": 254, "total_fragments": 598, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium aerophilum", "strain": "strain=TRE17", "accession": "GCA_010667685.1", "taxid": 1798155, "species_taxid": 1798155, "relation_to_type": "type", "validated": true, "ani": 79.3211, "matched_fragments": 234, "total_fragments": 598, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium pseudolongum subsp. pseudolongum", "strain": "strain=ATCC 25526", "accession": "GCA_022691205.1", "taxid": 31954, "species_taxid": 1694, "relation_to_type": "type", "validated": true, "ani": 79.2988, "matched_fragments": 242, "total_fragments": 598, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium phasiani", 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