{ "type": "genome", "identifier": "GCF_000420685.1", "organism": "Gordonia hirsuta DSM 44140 = NBRC 16056", "title": "Gordonia hirsuta DSM 44140 = NBRC 16056", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000420685.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440575", "wgs_master": "ATVK00000000.1", "refseq_category": "na", "taxid": "1121927", "species_taxid": "53427", "organism_name": "Gordonia hirsuta DSM 44140 = NBRC 16056", "infraspecific_name": "strain=DSM 44140", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/09", "asm_name": "ASM42068v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000420685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/420/685/GCF_000420685.1_ASM42068v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3489460", "genome_size_ungapped": "3489460", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "77", "contig_count": "77", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000420685.1-RS_2024_05_15", "annotation_date": "2024-05-15", "total_gene_count": "3263", "protein_coding_gene_count": "3141", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-09", "dateModified": "2013-07-09", "datePublished": "2013-07-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Gordonia hirsuta DSM 44140 = NBRC 16056" ], "sample_taxid": [ "1121927" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "0.953 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3489460", "Number of Sequences": "77", "Longest Sequences (bp)": "279701", "N50 (bp)": "84503", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.4", "Number of CDSs": "3163", "Average Protein Length": "329.3", "Coding Ratio (%)": "89.5", "Number of rRNAs": "4", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gordonia hirsuta", "strain": "strain=NBRC 16056", "accession": "GCA_000333015.1", "taxid": 53427, "species_taxid": 53427, "relation_to_type": 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"below_threshold" }, { "organism_name": "Gordonia crocea", "strain": "strain=NBRC 107697", "accession": "GCA_009932435.1", "taxid": 589162, "species_taxid": 589162, "relation_to_type": "type", "validated": true, "ani": 79.1218, "matched_fragments": 469, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia hydrophobica", "strain": "strain=NBRC 16057", "accession": "GCA_001592365.1", "taxid": 40516, "species_taxid": 40516, "relation_to_type": "type", "validated": true, "ani": 79.105, "matched_fragments": 529, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia spumicola", "strain": "strain=NBRC 107696", "accession": "GCA_009932475.1", "taxid": 589161, "species_taxid": 589161, "relation_to_type": "type", "validated": true, "ani": 79.0712, "matched_fragments": 509, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia malaquae", "strain": "strain=DSM 45064", "accession": "GCA_900105435.1", "taxid": 410332, "species_taxid": 410332, "relation_to_type": "type", "validated": true, "ani": 78.9877, "matched_fragments": 458, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia namibiensis", "strain": "strain=NBRC 108229", "accession": "GCA_000298235.1", "taxid": 168480, "species_taxid": 168480, "relation_to_type": "type", "validated": true, "ani": 78.7438, "matched_fragments": 456, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia rubripertincta", "strain": "strain=NBRC 101908", "accession": "GCA_000327325.1", "taxid": 36822, "species_taxid": 36822, "relation_to_type": "type", "validated": true, "ani": 78.6423, "matched_fragments": 441, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia rubripertincta", "strain": "strain=ATCC 14352", "accession": 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