{ "type": "genome", "identifier": "GCF_000421165.1", "organism": "Marinobacter daepoensis DSM 16072", "title": "Marinobacter daepoensis DSM 16072", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000421165.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440900", "wgs_master": "ATWI00000000.1", "refseq_category": "reference genome", "taxid": "1122197", "species_taxid": "262077", "organism_name": "Marinobacter daepoensis DSM 16072", "infraspecific_name": "strain=DSM 16072", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/09", "asm_name": "ASM42116v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000421165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/421/165/GCF_000421165.1_ASM42116v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3830061", "genome_size_ungapped": "3830021", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000421165.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3539", "protein_coding_gene_count": "3465", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-09", "dateModified": "2013-07-09", "datePublished": "2013-07-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter daepoensis DSM 16072" ], "sample_taxid": [ "1122197" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.087 MB", "sample_ph_range": { "min": 78.0, "max": 78.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3830061", "Number of Sequences": "16", "Longest Sequences (bp)": "1045162", "N50 (bp)": "943888", "Gap Ratio (%)": "0.001044", "GCcontent (%)": "56.8", "Number of CDSs": "3521", "Average Protein Length": "329.5", "Coding Ratio (%)": "90.9", "Number of rRNAs": "2", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter daepoensis", "strain": "strain=DSM 16072", "accession": "GCA_000421165.1", "taxid": 262077, "species_taxid": 262077, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1269, "total_fragments": 1270, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter nauticus", "strain": "strain=DSM 50418", "accession": "GCA_003634635.1", "taxid": 2743, "species_taxid": 2743, "relation_to_type": "type", "validated": true, "ani": 81.877, "matched_fragments": 803, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter vinifirmus", "strain": "strain=FB1", "accession": "GCA_002258215.1", "taxid": 355591, "species_taxid": 355591, "relation_to_type": "type", "validated": true, "ani": 80.6937, "matched_fragments": 590, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis", "strain": "strain=SL013A34A2", "accession": "GCA_003007715.1", "taxid": 1389223, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 80.2523, "matched_fragments": 614, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis subsp. alexandrii", "strain": "strain=LZ-6", "accession": "GCA_005871095.1", "taxid": 2570350, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 80.1956, "matched_fragments": 604, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter fuscus", "strain": "strain=NH169-3", "accession": "GCA_003007675.1", "taxid": 2109942, "species_taxid": 2109942, "relation_to_type": "type", "validated": true, "ani": 80.0976, "matched_fragments": 610, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter pelagius", "strain": "strain=CGMCC 1.6775", "accession": "GCA_900114925.1", "taxid": 379482, "species_taxid": 379482, "relation_to_type": "type", "validated": true, "ani": 79.532, "matched_fragments": 469, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter arenosus", "strain": "strain=CAU 1620", "accession": "GCA_019264345.1", "taxid": 2856822, "species_taxid": 2856822, "relation_to_type": "type", "validated": true, "ani": 79.0353, "matched_fragments": 443, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter guineae", "strain": "strain=M3B", "accession": "GCA_002744735.1", "taxid": 432303, "species_taxid": 432303, "relation_to_type": "type", "validated": true, "ani": 79.0338, "matched_fragments": 471, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter gudaonensis", "strain": "strain=CGMCC 1.6294", "accession": "GCA_900115175.1", "taxid": 375760, "species_taxid": 375760, "relation_to_type": "type", "validated": true, "ani": 79.0121, "matched_fragments": 478, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter koreensis", "strain": "strain=DSM 17924", "accession": "GCA_023156285.1", "taxid": 335974, "species_taxid": 335974, "relation_to_type": "type", "validated": true, "ani": 79.0066, "matched_fragments": 414, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 78.9566, "matched_fragments": 401, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter sediminum", "strain": "strain=R65", "accession": "GCA_016820575.1", "taxid": 256323, "species_taxid": 256323, "relation_to_type": "type", "validated": true, "ani": 78.9499, "matched_fragments": 396, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter santoriniensis", "strain": "strain=NKSG1", "accession": "GCA_000347775.1", "taxid": 523742, "species_taxid": 523742, "relation_to_type": "type", "validated": true, "ani": 78.9446, "matched_fragments": 406, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter subterrani", "strain": "strain=JG233", "accession": "GCA_001045555.1", "taxid": 1658765, "species_taxid": 1658765, "relation_to_type": "type", "validated": true, "ani": 78.8811, "matched_fragments": 490, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter salinexigens", "strain": "strain=ZYF650", "accession": "GCA_008370345.1", "taxid": 2919747, "species_taxid": 2919747, "relation_to_type": "type", "validated": true, "ani": 78.8744, "matched_fragments": 411, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter denitrificans", "strain": "strain=JB02H27", "accession": "GCA_008795955.1", "taxid": 2597703, "species_taxid": 2597703, "relation_to_type": "type", "validated": true, "ani": 78.417, "matched_fragments": 410, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter xestospongiae", "strain": "strain=JCM 17469", "accession": "GCA_023156385.1", "taxid": 994319, "species_taxid": 994319, "relation_to_type": "type", "validated": true, "ani": 78.4008, "matched_fragments": 344, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter mobilis", "strain": "strain=CGMCC 1.7059", "accession": "GCA_900106945.1", "taxid": 488533, "species_taxid": 488533, "relation_to_type": "type", "validated": true, "ani": 78.3038, "matched_fragments": 308, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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