{ "type": "genome", "identifier": "GCF_000421625.1", "organism": "Thermus islandicus DSM 21543", "title": "Thermus islandicus DSM 21543", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000421625.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441230", "wgs_master": "ATXJ00000000.1", "refseq_category": "reference genome", "taxid": "1123389", "species_taxid": "540988", "organism_name": "Thermus islandicus DSM 21543", "infraspecific_name": "strain=DSM 21543", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/09", "asm_name": "ASM42162v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000421625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/421/625/GCF_000421625.1_ASM42162v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2263010", "genome_size_ungapped": "2263000", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "67", "contig_count": "67", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000421625.1-RS_2024_08_07", "annotation_date": "2024-08-07", "total_gene_count": "2456", "protein_coding_gene_count": "2324", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-09", "dateModified": "2013-07-09", "datePublished": "2013-07-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermus islandicus DSM 21543" ], "sample_taxid": [ "1123389" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iceland" ], "sample_host_location_id": [], "data_size": "0.606 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2263010", "Number of Sequences": "67", "Longest Sequences (bp)": "437023", "N50 (bp)": "241998", "Gap Ratio (%)": "0.000442", "GCcontent (%)": "68.4", "Number of CDSs": "2354", "Average Protein Length": "298.0", "Coding Ratio (%)": "93.0", "Number of rRNAs": "6", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermus islandicus", "strain": "strain=DSM 21543", "accession": "GCA_000421625.1", "taxid": 540988, "species_taxid": 540988, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 720, "total_fragments": 724, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Thermus arciformis", "strain": "strain=JCM 15153", "accession": "GCA_022556335.1", "taxid": 482827, "species_taxid": 482827, "relation_to_type": "type", "validated": true, "ani": 87.42, "matched_fragments": 560, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus arciformis", "strain": "strain=CGMCC 1.6992", "accession": "GCA_900102145.1", "taxid": 482827, "species_taxid": 482827, "relation_to_type": "type", "validated": true, "ani": 87.3956, "matched_fragments": 568, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus aquaticus", "strain": "strain=YT-1", "accession": "GCA_001280255.1", "taxid": 271, "species_taxid": 271, "relation_to_type": "type", "validated": true, "ani": 86.417, "matched_fragments": 543, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus thermophilus", "strain": "strain=JCM10941", "accession": "GCA_019973715.1", "taxid": 274, "species_taxid": 274, "relation_to_type": "type", "validated": true, "ani": 86.3169, "matched_fragments": 531, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus thermophilus", "strain": "strain=HB8", "accession": "GCA_000091545.1", "taxid": 274, "species_taxid": 274, "relation_to_type": "type", "validated": true, "ani": 86.2722, "matched_fragments": 535, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus sediminis", "strain": "strain=L198", "accession": "GCA_003426945.1", "taxid": 1761908, "species_taxid": 1761908, "relation_to_type": "type", "validated": true, "ani": 85.4424, "matched_fragments": 532, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus igniterrae", "strain": "strain=ATCC 700962", "accession": "GCA_000376265.1", "taxid": 88189, "species_taxid": 88189, "relation_to_type": "type", "validated": true, "ani": 85.3384, "matched_fragments": 534, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus thermamylovorans", "strain": "strain=CFH 72773T", "accession": "GCA_004307015.1", "taxid": 2509362, "species_taxid": 2509362, "relation_to_type": "type", "validated": true, "ani": 84.6328, "matched_fragments": 528, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus amyloliquefaciens", "strain": "strain=YIM 77409", "accession": "GCA_000744885.1", "taxid": 1449080, "species_taxid": 1449080, "relation_to_type": "type", "validated": true, "ani": 84.3722, "matched_fragments": 535, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus caliditerrae", "strain": "strain=YIM 77925", "accession": "GCA_021462525.1", "taxid": 1330700, 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001311545.1", "gtdb_species": "s__Thermus kawarayensis", "ani": 87.0531, "matched_fragments": 348, "total_fragments": 724, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001280255.1", "gtdb_species": "s__Thermus aquaticus", "ani": 86.4065, "matched_fragments": 544, "total_fragments": 724, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.02", 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