{ "type": "genome", "identifier": "GCF_000421845.1", "organism": "Leucobacter chironomi DSM 19883", "title": "Leucobacter chironomi DSM 19883", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000421845.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441232", "wgs_master": "ATXU00000000.1", "refseq_category": "reference genome", "taxid": "1122175", "species_taxid": "491918", "organism_name": "Leucobacter chironomi DSM 19883", "infraspecific_name": "strain=DSM 19883", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/09", "asm_name": "ASM42184v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000421845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/421/845/GCF_000421845.1_ASM42184v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2964712", "genome_size_ungapped": "2964712", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000421845.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2751", "protein_coding_gene_count": "2665", "non_coding_gene_count": "57", "pubmed_id": "26203333" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-09", "dateModified": "2013-07-09", "datePublished": "2013-07-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Leucobacter chironomi DSM 19883" ], "sample_taxid": [ "1122175" ], "sample_host_organism": [ "Chironomidae" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Israel" ], "sample_host_location_id": [], "data_size": "0.797 MB", "sample_ph_range": { "min": 68.0, "max": 68.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2964712", "Number of Sequences": "27", "Longest Sequences (bp)": "439220", "N50 (bp)": "268438", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.9", "Number of CDSs": "2702", "Average Protein Length": "330.3", "Coding Ratio (%)": "90.3", "Number of rRNAs": "6", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leucobacter chironomi", "strain": "strain=DSM 19883", "accession": "GCA_000421845.1", "taxid": 491918, "species_taxid": 491918, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 975, "total_fragments": 975, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leucobacter muris", "strain": "strain=DSM 101948", "accession": "GCA_004028235.1", "taxid": 1935379, "species_taxid": 1935379, "relation_to_type": "type", "validated": true, "ani": 88.7057, "matched_fragments": 774, "total_fragments": 975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter celer subsp. astrifaciens", "strain": "strain=CBX151", "accession": "GCA_001273835.1", "taxid": 1461260, "species_taxid": 668625, "relation_to_type": "type", "validated": true, "ani": 83.3111, "matched_fragments": 646, "total_fragments": 975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter triazinivorans", "strain": "strain=JW-1", "accession": "GCA_004208635.1", "taxid": 1784719, "species_taxid": 1784719, "relation_to_type": "type", "validated": true, "ani": 83.0518, "matched_fragments": 641, "total_fragments": 975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter ruminantium", "strain": "strain=A2", "accession": "GCA_017565705.1", "taxid": 1289170, "species_taxid": 1289170, "relation_to_type": "type", "validated": true, "ani": 82.8905, "matched_fragments": 572, "total_fragments": 975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chromiisoli", "strain": "strain=CSA1", "accession": "GCA_016522505.1", "taxid": 2796471, "species_taxid": 2796471, "relation_to_type": "type", "validated": true, "ani": 82.5815, "matched_fragments": 548, "total_fragments": 975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter massiliensis", "strain": "strain=122RC15", "accession": "GCA_002982315.1", "taxid": 1686285, "species_taxid": 1686285, "relation_to_type": "type", "validated": true, "ani": 82.4842, "matched_fragments": 567, "total_fragments": 975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chromiiresistens", "strain": "strain=JG 31", "accession": "GCA_000231305.1", "taxid": 1079994, "species_taxid": 1079994, "relation_to_type": "type", "validated": true, "ani": 82.2117, "matched_fragments": 558, "total_fragments": 975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter zeae", "strain": "strain=CC-MF41", "accession": "GCA_016758175.1", "taxid": 1257004, "species_taxid": 1257004, "relation_to_type": "type", "validated": true, "ani": 82.0953, "matched_fragments": 600, "total_fragments": 975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter soli", "strain": "strain=CIP 111803", "accession": "GCA_910593785.1", "taxid": 2812850, "species_taxid": 2812850, "relation_to_type": "type", "validated": true, "ani": 81.155, "matched_fragments": 484, "total_fragments": 975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces marinus", "strain": "strain=DSM 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2762209, "species_taxid": 2762209, "relation_to_type": "type", "validated": true, "ani": 77.9873, "matched_fragments": 297, "total_fragments": 975, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_000421845.1", "gtdb_species": "s__Leucobacter chironomi", "ani": 100.0, "matched_fragments": 975, "total_fragments": 975, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leucobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004028235.1", "gtdb_species": "s__Leucobacter muris", "ani": 88.6967, "matched_fragments": 773, "total_fragments": 975, "gtdb_taxonomy": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Leucobacter", "chironomi", "DSM", "19883" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }