{
    "type": "genome",
    "identifier": "GCF_000422285.1",
    "organism": "Desulfatiglans anilini DSM 4660",
    "title": "Desulfatiglans anilini DSM 4660",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000422285.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441472",
        "wgs_master": "AULM00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1121399",
        "species_taxid": "90728",
        "organism_name": "Desulfatiglans anilini DSM 4660",
        "infraspecific_name": "strain=DSM 4660",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/11",
        "asm_name": "ASM42228v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000422285.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/422/285/GCF_000422285.1_ASM42228v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4667344",
        "genome_size_ungapped": "4664663",
        "gc_percent": "59.000000",
        "replicon_count": "0",
        "scaffold_count": "107",
        "contig_count": "109",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000422285.1-RS_2024_07_03",
        "annotation_date": "2024-07-03",
        "total_gene_count": "4120",
        "protein_coding_gene_count": "3989",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-11",
    "dateModified": "2013-07-11",
    "datePublished": "2013-07-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Desulfatiglans anilini DSM 4660"
        ],
        "sample_taxid": [
            "1121399"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany"
        ],
        "sample_host_location_id": [],
        "data_size": "1.322 MB",
        "sample_ph_range": {
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            "max": 6975.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4667344",
        "Number of Sequences": "107",
        "Longest Sequences (bp)": "443514",
        "N50 (bp)": "108426",
        "Gap Ratio (%)": "0.057442",
        "GCcontent (%)": "58.8",
        "Number of CDSs": "4016",
        "Average Protein Length": "322.8",
        "Coding Ratio (%)": "83.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Desulfatiglans anilini",
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                "accession": "GCA_000422285.1",
                "taxid": 90728,
                "species_taxid": 90728,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1494,
                "total_fragments": 1501,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Syntrophobacter fumaroxidans",
                "strain": "strain=MPOB",
                "accession": "GCA_000014965.1",
                "taxid": 119484,
                "species_taxid": 119484,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.0151,
                "matched_fragments": 52,
                "total_fragments": 1501,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfarculus baarsii",
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                "accession": "GCA_000143965.1",
                "taxid": 453230,
                "species_taxid": 453230,
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                "ani": 82.2179,
                "matched_fragments": 59,
                "total_fragments": 1501,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfosarcina widdelii",
                "strain": "strain=PP31",
                "accession": "GCA_009688965.1",
                "taxid": 947919,
                "species_taxid": 947919,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9933,
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                "total_fragments": 1501,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000422285.1",
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                "matched_fragments": 1494,
                "total_fragments": 1501,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__DSM-4660;o__Desulfatiglandales;f__Desulfatiglandaceae;g__Desulfatiglans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_900498135.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__DSM-4660;o__Desulfatiglandales;f__Desulfatiglandaceae;g__Desulfatiglans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_002840535.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__DSM-4660;o__Desulfatiglandales;f__HGW-15;g__HGW-15",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.55",
                "min_intra_species_ani": "95.55",
                "mean_intra_species_af": "0.86",
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            },
            {
                "accession": "GCA_016926135.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCA_018830135.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfarculia;o__Adiutricales;f__JAHJTB01;g__JAHJTB01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018812395.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfarculia;o__Desulfarculales;f__JAHJDS01;g__JAHJDS01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016844935.1",
                "gtdb_species": "s__NaphS2 sp016844935",
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                "total_fragments": 1501,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__DSM-4660;o__Desulfatiglandales;f__Desulfatiglandaceae;g__NaphS2",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.096,
        "cell_length": 0.176,
        "doubling_h": null,
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        "optimum_tmp": 35.0,
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        "gc_content": 58.8,
        "coding_genes": null,
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        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Desulfatiglans",
        "anilini",
        "DSM",
        "4660"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}