{ "type": "genome", "identifier": "GCF_000422545.1", "organism": "Desulfocurvibacter africanus subsp. africanus DSM 2603", "title": "Desulfocurvibacter africanus subsp. africanus DSM 2603", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000422545.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441475", "wgs_master": "AULZ00000000.1", "refseq_category": "na", "taxid": "1121435", "species_taxid": "873", "organism_name": "Desulfocurvibacter africanus subsp. africanus DSM 2603", "infraspecific_name": "strain=DSM 2603", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/11", "asm_name": "ASM42254v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000422545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/422/545/GCF_000422545.1_ASM42254v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4402525", "genome_size_ungapped": "4400400", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "43", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000422545.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4036", "protein_coding_gene_count": "3943", "non_coding_gene_count": "63", "pubmed_id": "31068923" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-11", "dateModified": "2013-07-11", "datePublished": "2013-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfocurvibacter africanus subsp. africanus DSM 2603" ], "sample_taxid": [ "1121435" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.241 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4402525", "Number of Sequences": "41", "Longest Sequences (bp)": "483727", "N50 (bp)": "193833", "Gap Ratio (%)": "0.048268", "GCcontent (%)": "61.1", "Number of CDSs": "4033", "Average Protein Length": "308.3", "Coding Ratio (%)": "84.7", "Number of rRNAs": "2", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfocurvibacter africanus subsp. africanus", "strain": "strain=DSM 2603", "accession": "GCA_000422545.1", "taxid": 1511600, "species_taxid": 873, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1445, "total_fragments": 1449, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Desulfohalovibrio alkalitolerans", "strain": "strain=DSM 16529", "accession": "GCA_000422245.1", "taxid": 293256, "species_taxid": 293256, "relation_to_type": "type", "validated": true, "ani": 77.8232, "matched_fragments": 271, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfohalovibrio reitneri", "strain": "strain=L21-Syr-AB", "accession": "GCA_000711295.1", "taxid": 1307759, "species_taxid": 1307759, "relation_to_type": "type", "validated": true, "ani": 77.7834, "matched_fragments": 271, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio aespoeensis", "strain": "strain=Aspo-2", "accession": "GCA_000176915.2", "taxid": 182210, "species_taxid": 182210, "relation_to_type": "type", "validated": true, "ani": 77.3393, "matched_fragments": 229, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paucidesulfovibrio longus", "strain": "strain=DSM 6739", "accession": "GCA_000420485.1", "taxid": 889, "species_taxid": 889, "relation_to_type": "type", "validated": true, "ani": 77.2579, "matched_fragments": 229, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio indicus", "strain": "strain=J2", "accession": "GCA_001563225.1", "taxid": 1716143, "species_taxid": 1716143, "relation_to_type": "type", "validated": true, "ani": 77.2155, "matched_fragments": 245, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fundidesulfovibrio magnetotacticus", "strain": "strain=FSS-1", "accession": "GCA_013019105.1", "taxid": 2730080, "species_taxid": 2730080, "relation_to_type": "type", "validated": true, "ani": 77.2033, "matched_fragments": 272, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fundidesulfovibrio putealis", "strain": "strain=DSM 16056", "accession": "GCA_000429325.1", "taxid": 270496, "species_taxid": 270496, "relation_to_type": "type", "validated": true, "ani": 77.1578, "matched_fragments": 240, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupidesulfovibrio liaohensis", "strain": "strain=XJ01", "accession": "GCA_011682075.1", "taxid": 2604158, "species_taxid": 2604158, "relation_to_type": "type", "validated": true, "ani": 77.0199, "matched_fragments": 202, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solidesulfovibrio alcoholivorans", "strain": "strain=DSM 5433", "accession": "GCA_000702665.1", "taxid": 81406, "species_taxid": 81406, "relation_to_type": "type", "validated": true, "ani": 76.8956, "matched_fragments": 245, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio carbinoliphilus subsp. oakridgensis", "strain": "strain=FW-101-2B", "accession": "GCA_000177215.2", "taxid": 694327, "species_taxid": 345370, "relation_to_type": "type", "validated": true, "ani": 76.8942, "matched_fragments": 208, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio tunisiensis", "strain": "strain=RB22", "accession": "GCA_022809775.1", "taxid": 463192, "species_taxid": 463192, "relation_to_type": "type", "validated": true, "ani": 76.7919, "matched_fragments": 145, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solidesulfovibrio aerotolerans", "strain": "strain=DSM 16695", "accession": "GCA_009856865.1", "taxid": 295255, "species_taxid": 295255, "relation_to_type": "type", "validated": true, "ani": 76.6353, "matched_fragments": 146, 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null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Desulfocurvibacter", "africanus", "subsp.", "africanus", "DSM", "2603" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }