{ "type": "genome", "identifier": "GCF_000422565.1", "organism": "Desulfovibrio aminophilus DSM 12254", "title": "Desulfovibrio aminophilus DSM 12254", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000422565.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440804", "wgs_master": "AUMA00000000.1", "refseq_category": "reference genome", "taxid": "1121440", "species_taxid": "81425", "organism_name": "Desulfovibrio aminophilus DSM 12254", "infraspecific_name": "strain=DSM 12254", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/11", "asm_name": "ASM42256v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000422565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/422/565/GCF_000422565.1_ASM42256v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3419064", "genome_size_ungapped": "3414374", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000422565.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "3318", "protein_coding_gene_count": "3246", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-11", "dateModified": "2013-07-11", "datePublished": "2013-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfovibrio aminophilus DSM 12254" ], "sample_taxid": [ "1121440" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Colombia" ], "sample_host_location_id": [], "data_size": "0.937 MB", "sample_ph_range": { "min": 6780.0, "max": 6780.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3419064", "Number of Sequences": "25", "Longest Sequences (bp)": "407544", "N50 (bp)": "310359", "Gap Ratio (%)": "0.137172", "GCcontent (%)": "66.2", "Number of CDSs": "3269", "Average Protein Length": "317.2", "Coding Ratio (%)": "91.0", "Number of rRNAs": "4", "Number of tRNAs": "52", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudodesulfovibrio mercurii", "strain": "strain=ND132", "accession": "GCA_000189295.2", "taxid": 641491, "species_taxid": 641491, 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"total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfocurvibacter africanus subsp. africanus", "strain": "strain=DSM 2603", "accession": "GCA_000422545.1", "taxid": 1511600, "species_taxid": 873, "relation_to_type": "type", "validated": true, "ani": 77.8256, "matched_fragments": 271, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupidesulfovibrio oxamicus", "strain": "strain=NCIMB 9442", "accession": "GCA_015731765.1", "taxid": 32016, "species_taxid": 32016, "relation_to_type": "type", "validated": true, "ani": 77.797, "matched_fragments": 235, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupidesulfovibrio liaohensis", "strain": "strain=XJ01", "accession": "GCA_011682075.1", "taxid": 2604158, "species_taxid": 2604158, "relation_to_type": "type", "validated": true, "ani": 77.605, "matched_fragments": 243, "total_fragments": 1130, 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