{
    "type": "genome",
    "identifier": "GCF_000422645.1",
    "organism": "Ferrimonas futtsuensis DSM 18154",
    "title": "Ferrimonas futtsuensis DSM 18154",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000422645.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441517",
        "wgs_master": "AUGL00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1121878",
        "species_taxid": "364764",
        "organism_name": "Ferrimonas futtsuensis DSM 18154",
        "infraspecific_name": "strain=DSM 18154",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/11",
        "asm_name": "ASM42264v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000422645.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/422/645/GCF_000422645.1_ASM42264v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4296027",
        "genome_size_ungapped": "4294157",
        "gc_percent": "58.500000",
        "replicon_count": "0",
        "scaffold_count": "39",
        "contig_count": "42",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000422645.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "3966",
        "protein_coding_gene_count": "3873",
        "non_coding_gene_count": "78",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-11",
    "dateModified": "2013-07-11",
    "datePublished": "2013-07-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ferrimonas futtsuensis DSM 18154"
        ],
        "sample_taxid": [
            "1121878"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.215 MB",
        "sample_ph_range": {
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            "max": 69.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4296027",
        "Number of Sequences": "39",
        "Longest Sequences (bp)": "418907",
        "N50 (bp)": "218137",
        "Gap Ratio (%)": "0.043529",
        "GCcontent (%)": "58.7",
        "Number of CDSs": "3941",
        "Average Protein Length": "320.8",
        "Coding Ratio (%)": "88.3",
        "Number of rRNAs": "6",
        "Number of tRNAs": "65",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "status": "conclusive"
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                "species_taxid": 2569538,
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                "status": "below_threshold"
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            {
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            },
            {
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                "matched_fragments": 854,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Ferrimonas marina",
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                "accession": "GCA_900129905.1",
                "taxid": 299255,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Ferrimonas aestuarii",
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Shewanella litorisediminis",
                "strain": "strain=CCUG 62411",
                "accession": "GCA_023349165.1",
                "taxid": 1173586,
                "species_taxid": 1173586,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia entomophila",
                "strain": "strain=A1",
                "accession": "GCA_021462285.1",
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                "species_taxid": 42906,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella insulae",
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                "taxid": 2681496,
                "species_taxid": 2681496,
                "relation_to_type": "type",
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                "ani": 76.4633,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas lalucatii",
                "strain": "strain=R1b54",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Shewanella salipaludis",
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                "accession": "GCA_012911865.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
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        "cc_result": {
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        "gtdb_result": [
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                "accession": "GCF_000422645.1",
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                "total_fragments": 1412,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Ferrimonas",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "1.00",
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            },
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 1.0,
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        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
        "Ferrimonas",
        "futtsuensis",
        "DSM",
        "18154"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}